Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021345.1 Corchorus olitorius cultivar O-4 contig21378, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41734

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1579--1636
30
1.9
30
93
6
100
29
6
10
53
1.61
2254--2293
19
2.2
18
86
4
53
30
20
5
45
1.72
2870--2912
20
2.2
19
88
12
61
39
23
9
27
1.85
3862--4152
151
2.0
150
87
4
430
35
18
6
39
1.76
5492--5889
218
1.8
219
91
1
665
42
13
22
21
1.88
7996--8032
5
8.0
5
93
6
53
21
0
0
78
0.75
18797--18891
19
5.2
19
73
14
83
30
10
10
48
1.71
18767--18896
53
2.4
54
92
5
208
26
8
13
51
1.69
20059--20119
31
2.0
31
93
0
104
27
11
18
42
1.84
29844--29960
32
3.7
32
86
4
159
23
18
10
47
1.80
34139--34234
27
3.6
27
94
2
158
39
27
17
15
1.90
37202--37241
15
2.6
16
88
4
55
15
10
12
62
1.54
37281--37353
29
2.6
28
89
4
103
13
19
27
39
1.89
41412--41734
93
3.5
93
94
1
551
45
4
18
30
1.70
41412--41734
47
7.0
46
93
2
540
45
4
18
30
1.70
41421--41734
140
2.3
139
97
0
592
44
4
18
31
1.71

Tables:   1

The End!