Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021347.1 Corchorus olitorius cultivar O-4 contig21380, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2957
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.29


Found at i:1442 original size:76 final size:76

Alignment explanation


    Indices: 1305--1455  Score: 173
    Period size: 76  Copynumber: 2.0  Consensus size: 76

       1295 ACAAGGACCC

                                                               *           * 
       1305 CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCTTGAGAACCCAGGT
          1 CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCCTGAGAACCCAGAT

                       
       1370 GGGCAGTGTCA
         66 GGGCAGTGTCA

                    *     * *            *                            **     
       1381 CGACTCCAGCTGGGTGTCCACATGGTTTGTC-TGAAG-ACCCATGT-GTTTCGCCTGATCACCCA
          1 CGACTCCACCTGGGCGCCCACATGG-TTGCCTTG-AGCACCCATGTGGTTT-GCCTGAGAACCCA

                   *     
       1443 GATGGGCTGTGTC
         63 GATGGGCAGTGTC

       1456 TTAGCTCATC


Statistics
Matches: 63,  Mismatches: 9, Indels: 6
        0.81            0.12        0.08

Matches are distributed among these distances:
  75    4  0.06
  76   53  0.84
  77    6  0.10

ACGTcount: A:0.17, C:0.29, G:0.29, T:0.25


Consensus pattern (76 bp):   
CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCCTGAGAACCCAGAT
GGGCAGTGTCA
Done.