Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021355.1 Corchorus olitorius cultivar O-4 contig21388, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77095

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1810--2209
199
2.0
199
97
0
746
32
19
21
26
1.97
6776--6846
23
3.2
23
66
11
67
54
23
4
16
1.59
6766--6851
43
2.0
43
97
0
163
51
24
5
18
1.68
6874--6927
17
3.4
17
70
19
62
37
24
11
27
1.89
6876--6936
30
2.0
30
100
0
122
40
19
9
29
1.84
11026--11133
55
2.0
55
96
0
198
9
17
17
55
1.67
11147--11202
28
2.0
28
85
0
76
5
19
21
53
1.65
12505--12572
29
2.3
30
78
14
70
47
13
20
19
1.82
15713--15761
25
2.0
25
91
0
80
28
16
32
22
1.95
16527--16579
25
2.1
26
89
3
81
18
39
37
3
1.69
22026--22087
3
20.7
3
93
0
106
70
0
29
0
0.87
22118--22168
24
2.1
25
82
10
61
15
41
41
1
1.58
22249--22292
19
2.4
18
84
3
52
79
0
20
0
0.73
25877--25947
27
2.6
29
84
11
103
15
5
22
56
1.60
26311--26343
15
2.3
15
89
5
50
54
12
15
18
1.71
30331--30378
22
2.2
22
85
3
62
25
8
8
58
1.55
30338--30384
21
2.2
22
84
3
69
29
8
6
55
1.55
32850--32915
32
2.1
32
85
0
87
54
19
1
24
1.53
33469--33507
18
2.2
18
90
0
60
12
30
7
48
1.69
36108--36160
23
2.3
23
83
3
63
26
15
9
49
1.74
36119--36163
23
2.0
23
90
0
72
26
13
8
51
1.70
37042--37087
3
15.3
3
95
0
83
0
65
0
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37209--37274
32
2.1
32
88
0
96
53
22
1
22
1.55
38559--38583
6
4.2
6
100
0
50
0
52
16
32
1.44
40447--40499
23
2.3
23
83
3
63
28
13
9
49
1.73
40458--40502
23
2.0
23
90
0
72
28
11
8
51
1.68
41382--41417
3
12.0
3
93
0
63
0
63
0
36
0.94
41537--41602
32
2.1
32
91
0
105
53
24
1
21
1.55
42913--43267
88
4.0
88
92
4
556
35
7
30
26
1.83
56584--56670
43
2.0
43
100
0
174
16
13
31
39
1.87
57027--57110
33
2.6
33
84
5
100
15
30
39
14
1.87
57825--57849
2
12.5
2
100
0
50
48
0
0
52
1.00
58095--58128
7
4.7
7
88
3
50
73
0
11
14
1.10
64169--64230
25
2.6
24
87
5
81
59
4
6
29
1.43
65400--65493
46
2.0
46
95
0
170
22
30
26
20
1.98
75203--75350
22
6.9
20
72
12
100
36
12
15
35
1.85
75204--75350
44
3.4
42
79
10
129
36
12
14
36
1.84
75438--75510
28
2.7
28
95
4
132
39
30
20
9
1.84
76561--76819
22
11.7
22
74
8
114
36
9
16
37
1.81
76671--76840
64
2.6
65
76
7
168
38
10
14
35
1.81
76855--76910
21
2.6
21
80
8
60
41
10
8
39
1.71
76935--77082
22
6.7
22
81
1
154
35
9
18
36
1.83
76940--77095
66
2.4
66
80
4
170
35
9
18
36
1.84

Tables:   1

The End!