Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021356.1 Corchorus olitorius cultivar O-4 contig21389, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19333

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
566--591
13
2.0
13
100
0
52
61
7
23
7
1.49
1260--1911
22
29.8
22
68
9
192
36
11
15
36
1.83
1407--1523
45
2.6
44
81
5
128
37
11
17
34
1.85
1631--1911
66
4.3
65
73
10
214
37
12
14
36
1.84
3094--3163
36
1.9
36
91
0
113
21
10
8
60
1.55
3676--4087
205
2.0
204
95
1
747
43
8
10
36
1.71
5310--5348
10
3.7
11
86
10
55
10
58
30
0
1.31
5471--5523
25
2.1
25
96
0
97
13
0
22
64
1.28
5480--5519
21
2.0
20
95
5
71
15
0
20
65
1.28
5476--5525
21
2.4
20
80
6
64
12
0
20
68
1.21
15291--15325
16
2.2
16
100
0
70
48
17
22
11
1.79
19243--19291
23
2.1
23
100
0
98
44
22
8
24
1.79

Tables:   1

The End!