Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002136.1 Corchorus olitorius cultivar O-4 contig02136, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1735
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30


Found at i:761 original size:21 final size:21

Alignment explanation


    Indices: 735--776  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        725 GCATCTTAGG

                         *       
        735 CAACTCCGATGAGCTTGAAAC
          1 CAACTCCGATGAGATTGAAAC

                  *              
        756 CAACTCTGATGAGATTGAAAC
          1 CAACTCCGATGAGATTGAAAC

        777 TTCTTCCTTA


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21


Consensus pattern (21 bp):   
CAACTCCGATGAGATTGAAAC
Done.