Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021360.1 Corchorus olitorius cultivar O-4 contig21393, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 969

Length: 1615
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32


Found at i:188 original size:22 final size:21

Alignment explanation


    Indices: 158--248  Score: 78
    Period size: 22  Copynumber: 4.2  Consensus size: 21

        148 CTTGTCGATG

                *                *
        158 AATTGCTTCACCTTGAGTCGAA
          1 AATTTCTTC-CCTTGAGTCGAC

                                  
        180 AATTTCTTCCTCTT-AGTCGAC
          1 AATTTCTTCC-CTTGAGTCGAC

            *         *   *       
        201 TATTCTCTTCTCTTTAGTCGAC
          1 AATT-TCTTCCCTTGAGTCGAC

                                   
        223 AATTTC-TCTCCTTGAAGTCGAC
          1 AATTTCTTC-CCTTG-AGTCGAC

                
        245 AATT
          1 AATT

        249 CCTTAGTCGA


Statistics
Matches: 57,  Mismatches: 7, Indels: 10
        0.77            0.09        0.14

Matches are distributed among these distances:
  20    2  0.04
  21   18  0.32
  22   37  0.65

ACGTcount: A:0.22, C:0.25, G:0.12, T:0.41


Consensus pattern (21 bp):   
AATTTCTTCCCTTGAGTCGAC

Done.