Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021361.1 Corchorus olitorius cultivar O-4 contig21394, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27183

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4601--4636
19
1.9
18
88
5
54
33
22
2
41
1.68
11255--11295
21
2.0
21
95
0
73
51
9
17
21
1.74
11697--11789
36
2.6
36
87
0
123
40
18
18
22
1.91
11775--12188
39
10.9
39
73
12
254
36
18
21
23
1.95
11801--12058
38
6.7
38
77
4
169
35
17
21
24
1.95
11693--12171
77
6.4
75
74
11
270
37
18
20
23
1.94
12079--12138
31
1.9
32
93
3
104
40
20
20
20
1.92
11957--12167
109
1.9
111
83
11
279
37
18
22
21
1.94
14895--14928
2
17.0
2
93
0
59
50
2
0
47
1.16
21748--21831
29
2.8
28
79
15
87
41
7
13
38
1.71
24883--24977
21
4.4
21
82
2
109
20
47
21
11
1.81

Tables:   1

The End!