Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021363.1 Corchorus olitorius cultivar O-4 contig21396, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72470

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
996--1273
4
72.0
4
64
20
94
24
8
0
66
1.22
1004--1265
7
36.7
7
66
21
73
24
8
0
66
1.23
988--1037
14
3.5
14
78
10
57
18
2
0
80
0.82
1075--1256
44
4.1
44
85
6
228
25
9
0
64
1.27
1055--1186
19
7.1
19
74
12
96
25
12
0
62
1.30
1035--1256
94
2.4
90
80
12
238
25
9
0
63
1.28
1227--1268
19
2.3
18
84
8
57
28
2
2
66
1.16
8371--8403
17
1.9
17
93
0
57
24
21
15
39
1.91
9387--9621
29
8.1
29
86
0
301
41
22
18
18
1.91
9386--9621
86
2.7
87
84
1
305
41
22
18
18
1.91
10327--10431
31
3.5
30
73
15
99
35
19
20
25
1.95
10331--10492
60
2.7
61
88
2
229
37
17
18
26
1.93
10534--10701
31
5.6
30
70
16
141
27
19
20
32
1.97
10565--10666
29
3.4
29
70
15
100
29
19
19
31
1.97
10533--10697
60
2.8
60
96
0
303
27
20
20
32
1.97
10976--11024
17
2.9
17
87
0
71
6
24
46
22
1.74
11960--12028
36
1.9
36
93
0
120
47
1
14
36
1.53
23181--23238
2
29.0
2
92
0
98
50
3
0
46
1.18
33050--33330
140
2.0
140
98
0
544
37
25
11
25
1.90
42498--42527
2
15.0
2
100
0
60
50
0
0
50
1.00
44872--44929
28
2.1
28
90
6
91
27
15
12
44
1.82
53934--54088
51
3.0
51
97
0
292
22
5
21
50
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57715--57798
31
2.7
30
83
5
123
22
17
9
50
1.75
61294--61384
23
3.9
23
98
1
173
14
12
26
47
1.79
63578--63608
15
2.1
15
100
0
62
32
0
19
48
1.49
67255--67299
14
3.1
14
80
3
54
17
6
8
66
1.40
68788--68818
16
1.9
16
93
0
53
61
12
25
0
1.32

Tables:   1

The End!