genome.fa.s21373.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021373.1 Corchorus olitorius cultivar O-4 contig21406, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125138

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234--374	49	2.9	47	79	11	160	27	16	5	50	1.67
3672--3717	20	2.2	21	80	3	58	17	10	19	52	1.74
3685--3716	10	3.1	10	95	4	55	12	9	21	56	1.64
19881--19986	52	2.1	51	87	5	151	27	16	24	31	1.97
32969--33191	79	2.8	79	92	0	374	22	17	26	34	1.96
43391--43458	33	2.1	33	94	0	118	27	4	19	48	1.68
45262--45296	12	2.8	12	91	4	52	14	40	8	37	1.76
48437--48479	22	1.9	23	85	4	61	37	13	6	41	1.72
48486--48613	22	5.8	22	73	11	66	32	14	10	42	1.81
48530--48639	44	2.5	44	80	7	116	34	18	12	34	1.89
48530--48839	44	7.0	45	73	11	110	37	16	10	35	1.83
48698--48938	22	11.1	22	72	12	101	37	14	8	39	1.77
48733--48834	23	4.5	23	86	6	129	37	15	8	38	1.79
49104--49275	44	3.9	44	76	11	145	33	15	9	41	1.80
49057--49291	22	10.7	22	75	7	111	33	15	9	41	1.80
49314--49387	22	3.4	21	75	15	62	35	17	8	39	1.79
49313--49465	78	2.0	78	82	7	186	36	17	7	38	1.78
49501--49591	22	4.2	21	76	6	74	34	19	10	35	1.87
49573--49623	22	2.3	22	86	6	68	43	19	3	33	1.70
49392--49622	44	5.2	43	70	12	146	36	18	9	35	1.82
50847--50878	2	16.0	2	100	0	64	50	0	0	50	1.00
50988--51513	22	24.2	22	68	12	216	34	15	9	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51312--51430	61	2.0	61	83	6	152	36	18	7	37	1.79
51261--51494	128	1.8	128	85	5	330	34	17	8	38	1.81
51594--51831	44	5.4	44	73	10	173	33	15	10	40	1.82
51594--51758	88	1.9	88	85	2	233	33	15	10	41	1.81
51619--52204	22	26.8	21	67	15	189	35	16	10	37	1.83
52024--52208	66	2.8	67	83	8	238	38	17	8	35	1.80
52654--52692	20	2.0	20	85	10	53	64	2	5	28	1.28
56359--56410	19	2.8	20	74	11	56	48	1	0	50	1.12
63529--63709	93	1.9	93	94	0	317	26	23	16	33	1.96
70615--70643	13	2.1	14	93	6	51	41	6	10	41	1.66
71730--71754	6	4.2	6	100	0	50	36	48	0	16	1.46
78261--78322	32	1.9	32	83	0	79	30	1	11	56	1.44
78753--78783	13	2.5	12	94	5	53	58	0	0	41	0.98
85210--85344	45	3.0	44	83	4	162	27	25	22	24	2.00
89238--90206	484	2.0	484	99	0	1902	36	18	12	33	1.88
93096--93132	4	9.0	4	90	3	56	70	0	0	29	0.88
97135--97169	15	2.3	15	90	0	52	17	5	28	48	1.69
101233--101298	34	2.0	33	82	8	80	37	1	1	59	1.16
108274--108300	7	3.9	7	100	0	54	29	29	25	14	1.95
110943--110982	21	2.0	20	90	9	64	67	17	0	15	1.23
112189--112418	75	3.1	75	92	0	388	26	23	10	38	1.88
113240--113406	83	2.0	83	97	2	318	40	13	14	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113448--113491	16	2.7	15	83	13	52	47	2	0	50	1.13
113747--113798	19	2.9	17	89	10	86	42	17	17	23	1.89
115223--115248	12	2.2	12	100	0	52	57	0	11	30	1.34
115653--115694	20	2.1	20	100	0	84	35	33	4	26	1.77
115953--116016	25	2.6	25	100	0	128	9	14	12	64	1.50
117692--117744	27	2.0	28	92	7	92	41	11	22	24	1.86

Tables:   1

The End!