Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021374.1 Corchorus olitorius cultivar O-4 contig21407, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13988

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1160--1194
16
2.2
16
89
0
52
40
37
14
8
1.76
1923--1968
22
2.1
22
91
0
74
63
0
8
28
1.24
2503--2532
15
2.0
15
100
0
60
46
20
13
20
1.83
7959--8047
45
2.0
45
90
0
142
37
20
6
35
1.79
11196--11289
45
2.2
44
88
7
140
40
24
3
31
1.71
12037--12200
60
2.7
62
89
4
246
35
19
18
25
1.95
12033--12137
31
3.5
29
72
15
88
35
20
20
24
1.96
12240--12407
31
5.5
31
71
16
154
27
19
19
32
1.96
12271--12372
29
3.4
29
70
15
100
29
19
18
32
1.96
12239--12403
60
2.8
60
96
0
303
27
20
19
33
1.96
13079--13107
2
14.5
2
100
0
58
51
0
0
48
1.00
13342--13376
18
2.0
17
88
5
52
17
11
25
45
1.81
13945--13971
2
13.5
2
100
0
54
48
0
0
51
1.00

Tables:   1

The End!