Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021378.1 Corchorus olitorius cultivar O-4 contig21411, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15310
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:4332 original size:28 final size:28

Alignment explanation


    Indices: 4292--4349  Score: 107
    Period size: 28  Copynumber: 2.1  Consensus size: 28

       4282 AGAAGAGTAA

                   *                    
       4292 ATCACTGGAGAAACTTTAATGCACAGAT
          1 ATCACTGCAGAAACTTTAATGCACAGAT

                                        
       4320 ATCACTGCAGAAACTTTAATGCACAGAT
          1 ATCACTGCAGAAACTTTAATGCACAGAT

              
       4348 AT
          1 AT

       4350 ATCCTGAACT


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  28   29  1.00

ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26


Consensus pattern (28 bp):   
ATCACTGCAGAAACTTTAATGCACAGAT

Found at i:13249 original size:6 final size:6

Alignment explanation


    Indices: 13238--13269  Score: 64
    Period size: 6  Copynumber: 5.3  Consensus size: 6

      13228 TAAAACCTCC

                                                 
      13238 ATCATA ATCATA ATCATA ATCATA ATCATA AT
          1 ATCATA ATCATA ATCATA ATCATA ATCATA AT

      13270 AAATAACACC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34


Consensus pattern (6 bp):   
ATCATA

Done.