Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021384.1 Corchorus olitorius cultivar O-4 contig21417, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5952
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.36


Found at i:368 original size:2 final size:2

Alignment explanation


    Indices: 361--404  Score: 63
    Period size: 2  Copynumber: 22.5  Consensus size: 2

        351 TTTTATACTG

                        *                                 *               
        361 TA TA TA TA AA TA TA TA TA TA TA TA TA TA -A TC TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                
        402 TA T
          1 TA T

        405 TAAGCTAAAC


Statistics
Matches: 37,  Mismatches: 4, Indels: 2
        0.86            0.09        0.05

Matches are distributed among these distances:
   1    1  0.03
   2   36  0.97

ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48


Consensus pattern (2 bp):   
TA

Found at i:642 original size:2 final size:2

Alignment explanation


    Indices: 637--675  Score: 62
    Period size: 2  Copynumber: 19.5  Consensus size: 2

        627 ATTTTTTTTC

                                                                       
        637 AT AT AT AT AT AT AT AT AT AT AT AT AT AT ACT AT A- AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT A

        676 AAAGTACAAG


Statistics
Matches: 35,  Mismatches: 0, Indels: 4
        0.90            0.00        0.10

Matches are distributed among these distances:
   1    1  0.03
   2   32  0.91
   3    2  0.06

ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46


Consensus pattern (2 bp):   
AT

Done.