Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021385.1 Corchorus olitorius cultivar O-4 contig21418, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1921
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29


Found at i:1745 original size:21 final size:21

Alignment explanation


    Indices: 1711--1760  Score: 55
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       1701 CTCCAGCTGG

                    **        *  
       1711 GCACCCAGGTCGTAAGACTGA
          1 GCACCCAGCCCGTAAGACGGA

                          * *    
       1732 GCACCCAGCCCGTAGGCCGGA
          1 GCACCCAGCCCGTAAGACGGA

                    
       1753 GCACCCAG
          1 GCACCCAG

       1761 GCGCGAGCTG


Statistics
Matches: 24,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.24, C:0.38, G:0.30, T:0.08


Consensus pattern (21 bp):   
GCACCCAGCCCGTAAGACGGA
Done.