Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021393.1 Corchorus olitorius cultivar O-4 contig21426, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17529

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84--514
50
8.6
50
93
1
720
29
12
26
30
1.93
598--888
88
3.3
87
88
4
404
36
14
19
29
1.92
1294--1443
50
3.0
50
91
1
221
36
14
16
33
1.89
2049--2084
6
5.7
6
93
6
54
13
0
13
72
1.13
2049--2085
7
5.6
7
96
3
60
13
0
13
72
1.11
2486--2525
14
2.7
15
88
7
55
15
15
0
70
1.18
7303--7368
14
4.7
13
80
16
62
42
9
12
36
1.74
7578--7609
12
2.6
13
90
9
50
84
0
15
0
0.63
7976--8011
6
6.2
6
87
6
56
80
2
16
0
0.83
7976--8029
23
2.4
22
81
12
56
77
3
16
1
1.00
7976--8017
17
2.5
17
96
3
77
80
2
16
0
0.81
7976--8028
17
3.2
16
86
5
54
77
3
16
1
1.01
8982--9810
37
22.4
38
77
6
695
24
17
15
42
1.88
8982--9809
74
11.2
74
82
4
988
24
17
15
42
1.88
9833--9874
18
2.4
17
84
11
57
23
14
9
52
1.71
9906--10346
54
8.2
53
89
4
627
27
14
21
36
1.92
10283--10399
55
2.1
55
86
9
159
31
15
22
30
1.95
10283--10419
55
2.5
55
81
12
149
31
16
21
31
1.95
10430--10507
33
2.4
33
88
0
111
44
17
5
32
1.71
10639--11013
7
53.6
7
96
1
464
56
21
1
21
1.48
11061--11094
7
4.9
7
88
0
50
55
14
8
20
1.65
13858--13898
21
1.9
22
90
5
66
34
9
31
24
1.88

Tables:   1

The End!