Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021396.1 Corchorus olitorius cultivar O-4 contig21429, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67745

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8752--8778
2
13.5
2
100
0
54
51
0
0
48
1.00
11956--12100
72
2.0
73
90
4
231
51
2
24
22
1.61
13905--13942
2
19.0
2
100
0
76
50
0
0
50
1.00
14497--14560
31
2.1
31
93
0
110
31
4
14
50
1.63
16071--16117
2
23.5
2
100
0
94
51
0
48
0
1.00
17078--17171
45
2.2
43
90
7
147
38
22
5
34
1.77
24038--24084
16
2.9
16
83
0
58
46
34
10
8
1.69
30536--30602
21
3.2
21
64
16
57
50
14
5
28
1.66
30669--30782
57
2.0
57
94
1
203
40
1
24
33
1.66
32228--32273
2
23.0
2
95
0
83
50
0
2
47
1.13
32932--32973
2
21.0
2
100
0
84
50
0
0
50
1.00
33050--33294
43
5.8
43
84
6
340
22
10
26
41
1.85
33050--33294
84
2.9
85
94
1
431
22
10
26
41
1.85
34772--34865
45
2.2
42
86
7
127
38
3
19
39
1.68
35451--35549
29
3.3
29
66
18
78
37
14
19
29
1.91
35480--35583
31
3.4
30
67
19
81
39
16
18
25
1.91
35447--35580
60
2.2
60
93
5
227
37
14
19
28
1.91
35624--35784
60
2.7
61
88
1
229
27
18
16
37
1.92
39735--39775
7
5.9
7
100
0
82
14
14
29
41
1.86
46264--46302
21
1.9
20
85
15
53
35
10
12
41
1.77
52971--53005
2
17.5
2
100
0
70
51
0
0
48
1.00
56346--56533
53
3.5
53
88
0
277
33
22
25
19
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58944--59042
31
3.3
31
77
5
112
35
12
21
31
1.90

Tables:   1

The End!