Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021397.1 Corchorus olitorius cultivar O-4 contig21430, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65347

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4153--4183
16
1.9
16
93
0
53
41
0
6
51
1.27
4534--4564
3
10.3
3
100
0
62
0
35
0
64
0.94
4700--4754
15
3.7
15
90
0
83
45
36
3
14
1.63
5193--5484
101
2.9
101
88
0
415
27
22
22
27
2.00
15859--15884
3
8.7
3
100
0
52
30
0
0
69
0.89
16764--16846
38
2.3
36
83
6
96
36
16
21
25
1.94
19474--19499
11
2.4
11
100
0
52
34
7
19
38
1.80
23740--23784
2
23.5
2
82
8
58
53
2
0
44
1.13
27587--27618
3
10.7
3
93
0
55
0
34
0
65
0.93
28261--28292
14
2.3
14
100
0
64
6
31
15
46
1.71
28457--28575
16
7.5
16
73
5
98
14
21
31
32
1.93
28459--28571
32
3.6
31
79
3
109
15
22
30
32
1.94
29353--29406
23
2.4
22
81
9
63
7
14
37
40
1.74
34835--34874
21
2.1
19
86
13
55
20
27
15
37
1.92
40731--40783
25
2.1
25
82
3
61
41
13
1
43
1.54
40740--40790
25
2.1
25
88
3
77
47
9
0
43
1.36
49321--49388
34
1.9
35
88
8
102
26
26
13
33
1.93
60856--60882
6
4.5
6
100
0
54
70
0
0
29
0.88

Tables:   1

The End!