Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021398.1 Corchorus olitorius cultivar O-4 contig21431, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83859

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13842--13873
16
2.0
16
93
0
55
53
12
12
21
1.71
14780--14811
16
2.0
16
93
0
55
34
18
6
40
1.76
21802--21828
13
2.1
13
100
0
54
37
14
0
48
1.45
21912--22174
130
2.0
131
90
0
411
38
10
1
49
1.48
24311--24367
25
2.4
24
88
5
80
31
5
3
59
1.36
26775--26834
30
2.0
30
90
0
93
26
11
33
28
1.91
28943--29003
32
1.9
32
96
0
113
45
6
21
26
1.76
29607--29658
25
2.1
24
89
3
77
59
3
5
30
1.39
29607--29667
25
2.6
25
84
7
74
59
4
6
29
1.44
29754--29830
16
4.8
17
70
13
56
35
36
20
7
1.82
30511--30843
166
2.0
166
98
0
648
51
3
14
30
1.59
58157--58361
101
2.0
102
92
3
342
36
10
12
40
1.77
58838--58868
16
1.9
16
93
0
53
54
0
0
45
0.99
58995--59029
18
1.9
18
94
0
61
28
8
11
51
1.67
62402--62462
29
2.1
29
100
0
122
39
18
6
36
1.76
65668--65744
28
2.5
31
73
18
79
53
6
20
19
1.67
81351--81492
49
3.0
47
81
9
160
51
5
15
27
1.66
83361--83553
30
6.4
30
81
9
180
11
23
27
37
1.89
83361--83550
75
2.5
74
84
7
242
11
23
27
37
1.89
83375--83519
45
3.2
45
96
0
254
11
21
28
37
1.89

Tables:   1

The End!