Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002140.1 Corchorus olitorius cultivar O-4 contig02140, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 706

Length: 1178
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.23


Found at i:690 original size:28 final size:28

Alignment explanation


    Indices: 650--705  Score: 112
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        640 TAGGAAAGAA

                                        
        650 GAAGAACAAAACCCCTTCTGATAGCGAG
          1 GAAGAACAAAACCCCTTCTGATAGCGAG

                                        
        678 GAAGAACAAAACCCCTTCTGATAGCGAG
          1 GAAGAACAAAACCCCTTCTGATAGCGAG

        706 TTCGATAAGG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.39, C:0.25, G:0.21, T:0.14


Consensus pattern (28 bp):   
GAAGAACAAAACCCCTTCTGATAGCGAG
Done.