Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021401.1 Corchorus olitorius cultivar O-4 contig21434, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9278
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Found at i:919 original size:15 final size:15

Alignment explanation


    Indices: 899--928  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        889 ATATACTAAC

                           
        899 CCGGTGGAGGATATG
          1 CCGGTGGAGGATATG

                           
        914 CCGGTGGAGGATATG
          1 CCGGTGGAGGATATG

        929 GAAAATTATT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.20, C:0.13, G:0.47, T:0.20


Consensus pattern (15 bp):   
CCGGTGGAGGATATG

Found at i:1194 original size:21 final size:20

Alignment explanation


    Indices: 1161--1199  Score: 51
    Period size: 21  Copynumber: 1.9  Consensus size: 20

       1151 ATTATAAATT

                                 
       1161 AATTAAAACATATGATATTAA
          1 AATTAAAACATAT-ATATTAA

                  * *         
       1182 AATTAACATATATATATT
          1 AATTAAAACATATATATT

       1200 GTGTGTTGTA


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20    5  0.31
  21   11  0.69

ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38


Consensus pattern (20 bp):   
AATTAAAACATATATATTAA
Done.