Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021403.1 Corchorus olitorius cultivar O-4 contig21436, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13481

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
523--601
17
4.6
17
80
4
88
30
5
3
60
1.36
732--808
31
2.5
31
81
6
86
29
19
12
37
1.89
1770--1988
47
4.6
47
93
1
357
39
8
11
40
1.73
4445--4498
19
2.6
21
77
19
60
38
18
3
38
1.69
4979--5055
27
2.8
27
84
2
100
19
19
24
36
1.95
9389--9433
15
2.9
16
83
6
58
71
0
20
8
1.12
10221--10258
15
2.6
14
91
4
58
2
7
21
68
1.28
12677--12858
28
6.5
28
87
1
274
17
17
24
41
1.90
12677--12858
85
2.2
84
89
3
276
17
17
24
41
1.90

Tables:   1

The End!