Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021406.1 Corchorus olitorius cultivar O-4 contig21439, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3291
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.34


Found at i:3282 original size:13 final size:14

Alignment explanation


    Indices: 3252--3284  Score: 50
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       3242 AAAGAATCAA

                     *    
       3252 AAAAAAAACGCAGC
          1 AAAAAAAACCCAGC

                          
       3266 AAAAAAAACCCAG-
          1 AAAAAAAACCCAGC

                  
       3279 AAAAAA
          1 AAAAAA

       3285 TAGCGGG


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  13    6  0.33
  14   12  0.67

ACGTcount: A:0.73, C:0.18, G:0.09, T:0.00


Consensus pattern (14 bp):   
AAAAAAAACCCAGC
Done.