Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021407.1 Corchorus olitorius cultivar O-4 contig21440, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10209
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30


Found at i:4267 original size:21 final size:19

Alignment explanation


    Indices: 4219--4267  Score: 64
    Period size: 19  Copynumber: 2.5  Consensus size: 19

       4209 GTAACATTGA

                      *        
       4219 AATTCTC-TCTTTTCAGAT
          1 AATTCTCATCATTTCAGAT

                               
       4237 AATTCTCATCATTTCAGAT
          1 AATTCTCATCATTTCAGAT

                        
       4256 ATATTACTCATC
          1 A-ATT-CTCATC

       4268 TATAGGGGAC


Statistics
Matches: 27,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  18    7  0.26
  19   11  0.41
  20    3  0.11
  21    6  0.22

ACGTcount: A:0.29, C:0.22, G:0.04, T:0.45


Consensus pattern (19 bp):   
AATTCTCATCATTTCAGAT
Done.