Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021414.1 Corchorus olitorius cultivar O-4 contig21447, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27996

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2063--2110
24
2.0
24
87
4
69
22
6
25
45
1.75
2748--2817
35
2.0
35
94
0
122
30
27
7
35
1.83
3351--3390
20
2.0
20
95
0
71
57
5
0
37
1.21
12698--12862
76
2.2
77
98
1
323
24
10
18
46
1.80
12876--13411
22
24.7
22
68
11
166
34
11
17
37
1.85
12871--13528
44
15.2
44
68
12
231
34
10
17
37
1.84
12876--13512
66
9.8
66
67
13
225
34
10
16
37
1.84
13151--13355
109
1.9
109
83
2
268
34
10
20
35
1.87
13179--13410
109
2.1
109
80
3
252
33
10
20
35
1.87
16302--16339
20
2.0
20
94
5
69
42
21
10
26
1.85
16683--16745
32
2.0
32
84
6
83
23
17
15
42
1.88
20714--20743
16
1.9
16
93
6
53
56
13
0
30
1.37
21069--21116
2
24.0
2
95
0
87
0
2
47
50
1.12
21093--21180
43
2.0
43
95
4
158
6
15
23
53
1.66

Tables:   1

The End!