Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021415.1 Corchorus olitorius cultivar O-4 contig21448, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120126

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1150--1178
11
2.5
12
94
5
51
89
0
10
0
0.48
11239--11273
10
3.3
10
85
14
52
88
11
0
0
0.51
11239--11273
11
3.2
11
91
0
61
88
11
0
0
0.51
17673--17714
21
2.0
21
90
0
66
28
14
23
33
1.94
26207--26305
48
2.1
48
88
0
144
18
16
27
38
1.91
26654--26728
35
2.1
35
95
0
132
22
17
17
42
1.89
26770--26822
16
3.2
16
76
10
61
56
0
0
43
0.99
26930--26964
18
1.9
18
94
0
61
28
8
11
51
1.67
29600--29635
2
19.0
2
88
11
58
50
0
0
50
1.00
45116--45168
21
2.5
21
90
0
79
41
7
28
22
1.81
51206--51232
13
2.1
13
100
0
54
48
0
0
51
1.00
57346--57385
12
3.6
12
74
19
50
15
27
2
55
1.53
57343--57386
21
2.1
21
100
0
88
13
29
4
52
1.60
59699--59728
6
5.0
6
100
0
60
33
0
50
16
1.46
63964--64063
51
2.0
51
82
7
123
22
21
14
43
1.87
72022--72072
18
2.9
18
94
2
86
25
11
19
43
1.85
72148--72268
61
2.0
61
91
0
197
41
19
11
27
1.86
72869--72949
20
4.1
20
86
0
117
51
7
28
12
1.66
72866--72947
40
2.0
40
95
0
146
52
8
26
12
1.67
76639--76950
66
4.7
66
85
2
412
32
16
29
21
1.95
78909--78946
2
19.0
2
84
10
51
50
2
0
47
1.15
79481--79583
50
2.0
51
96
1
190
32
20
0
47
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83111--83213
52
2.0
52
94
0
179
31
15
19
33
1.93
83635--83696
30
2.1
30
87
6
90
50
4
20
24
1.68
84117--84191
36
2.1
36
100
0
150
38
18
5
37
1.74
84177--84284
53
2.0
53
96
0
198
47
15
12
24
1.81
86663--86694
3
10.7
3
100
0
64
34
0
31
34
1.58
88311--88336
13
2.0
13
100
0
52
30
23
0
46
1.53
95549--95605
25
2.4
24
85
5
71
33
5
1
59
1.30
109178--109231
27
2.0
27
96
0
99
37
35
7
20
1.81
109269--109338
34
2.1
34
97
2
133
37
8
21
32
1.84
119532--119579
6
7.7
6
78
17
53
79
14
2
4
0.98

Tables:   1

The End!