Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021416.1 Corchorus olitorius cultivar O-4 contig21449, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95504

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12236--12274
14
2.9
13
80
3
51
41
2
2
53
1.28
12289--12458
85
2.0
85
96
0
313
41
8
1
47
1.45
18256--18336
29
2.8
28
76
10
74
33
23
11
32
1.90
18737--18763
4
6.8
4
100
0
54
25
0
22
51
1.48
24258--24315
28
2.1
28
96
0
107
27
32
25
13
1.94
25858--25913
28
2.0
28
82
10
69
28
14
7
50
1.69
29000--29034
15
2.4
14
90
4
52
0
11
0
88
0.51
29005--29036
11
2.9
11
95
0
55
0
12
0
87
0.54
29317--29374
22
2.4
25
88
8
86
34
18
13
32
1.91
29666--30133
182
2.6
181
77
7
477
34
16
14
35
1.88
30257--30301
23
1.9
23
82
13
56
60
13
13
13
1.60
31145--31181
18
2.1
18
89
0
56
54
0
5
40
1.24
32305--32338
2
17.0
2
100
0
68
50
0
0
50
1.00
35580--35996
219
1.9
218
83
4
545
39
11
17
31
1.85
40760--40816
15
3.9
14
88
4
78
26
17
22
33
1.96
48402--48511
57
1.9
57
96
0
202
36
26
19
18
1.94
55802--55852
24
2.1
24
92
0
84
47
17
17
17
1.84
59760--59794
11
3.2
11
87
0
52
8
14
0
77
0.99
73134--73167
17
2.0
17
100
0
68
29
29
23
17
1.97
74021--74069
22
2.2
22
88
0
71
30
14
4
51
1.61
73961--74069
44
2.5
45
77
4
114
33
11
8
45
1.71
74092--74540
22
20.8
22
70
13
141
36
15
9
37
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74092--74158
23
3.0
23
82
2
73
38
17
11
31
1.87
74376--74408
16
2.1
16
94
0
57
33
3
12
51
1.54
74277--74429
60
2.5
60
81
5
166
34
15
8
41
1.78
74394--74517
66
1.9
66
83
9
164
35
12
9
41
1.76
74733--74849
43
2.8
41
82
8
130
37
11
6
43
1.68
74640--74885
22
11.6
21
71
15
127
34
13
8
43
1.75
75229--76306
539
2.0
539
91
1
1741
35
14
17
32
1.90
77940--77964
12
2.1
12
100
0
50
12
24
24
40
1.88
81797--81836
16
2.4
16
95
4
71
30
5
15
50
1.65
91396--91449
26
2.1
26
100
0
108
51
14
12
20
1.75
92178--92275
24
4.1
24
94
0
160
12
15
22
50
1.77
93949--94109
78
2.1
78
95
0
286
32
14
1
50
1.53
94949--95213
132
2.0
131
88
3
399
36
10
2
50
1.50

Tables:   1

The End!