Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021418.1 Corchorus olitorius cultivar O-4 contig21451, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11331
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29


Found at i:6335 original size:13 final size:13

Alignment explanation


    Indices: 6317--6341  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       6307 AGTAGTAAAT

                         
       6317 TTTTTCTTTTTTC
          1 TTTTTCTTTTTTC

                        
       6330 TTTTTCTTTTTT
          1 TTTTTCTTTTTT

       6342 TTCAAGAAAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88


Consensus pattern (13 bp):   
TTTTTCTTTTTTC

Found at i:9406 original size:18 final size:18

Alignment explanation


    Indices: 9383--9419  Score: 74
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       9373 CCCTAAGAAA

                              
       9383 TAAAACCAATTATGGAAT
          1 TAAAACCAATTATGGAAT

                              
       9401 TAAAACCAATTATGGAAT
          1 TAAAACCAATTATGGAAT

             
       9419 T
          1 T

       9420 GCACTCAGGA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.49, C:0.11, G:0.11, T:0.30


Consensus pattern (18 bp):   
TAAAACCAATTATGGAAT
Done.