Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002142.1 Corchorus olitorius cultivar O-4 contig02142, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5733
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36


Found at i:1508 original size:6 final size:6

Alignment explanation


    Indices: 1497--1523  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       1487 CTGCTGATGA

                                           
       1497 CCAGAC CCAGAC CCAGAC CCAGAC CCA
          1 CCAGAC CCAGAC CCAGAC CCAGAC CCA

       1524 AGAGTATGAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.33, C:0.52, G:0.15, T:0.00


Consensus pattern (6 bp):   
CCAGAC

Done.