Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021422.1 Corchorus olitorius cultivar O-4 contig21455, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46097

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1920--2080
69
2.3
70
86
1
225
21
29
22
26
1.99
14799--14834
18
2.1
17
94
5
63
11
16
8
63
1.49
15967--16046
31
2.6
31
79
13
94
58
8
6
26
1.51
17049--17079
2
15.5
2
100
0
62
51
0
0
48
1.00
17440--17504
28
2.3
28
82
10
78
40
16
21
21
1.92
17443--17516
29
2.5
30
80
8
89
40
14
22
21
1.90
22160--23095
470
2.0
465
95
1
1694
26
15
25
32
1.95
24764--24823
28
2.0
29
87
12
86
46
10
13
30
1.75
32154--32274
61
2.0
61
96
0
224
19
21
11
47
1.80
32284--32366
25
3.3
25
81
8
105
26
9
12
51
1.69
32323--32369
15
3.5
15
75
24
59
27
8
12
51
1.69
32506--32643
69
2.0
68
87
1
195
55
8
11
24
1.64
33733--33877
75
1.9
75
98
0
281
44
17
15
22
1.86
40253--40300
22
2.2
22
84
0
60
60
14
8
16
1.57

Tables:   1

The End!