Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021424.1 Corchorus olitorius cultivar O-4 contig21457, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34294

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
421--547
29
4.4
29
86
3
175
37
23
18
20
1.94
421--552
57
2.3
58
90
6
207
37
22
18
20
1.94
2062--2119
29
2.0
28
86
3
80
10
12
31
46
1.74
2122--2151
14
2.1
14
93
0
51
23
6
33
36
1.81
9983--10024
14
3.1
14
80
13
52
33
0
26
40
1.56
11259--11346
29
3.0
29
78
3
97
11
10
34
44
1.74
11349--11378
14
2.1
14
93
0
51
23
6
33
36
1.81
11518--12242
375
1.9
375
97
0
1360
26
22
12
38
1.90
14627--14766
49
2.9
48
83
8
162
27
17
6
49
1.70
15467--15516
18
2.8
18
90
0
73
30
36
22
12
1.90
19619--19662
16
2.8
16
86
10
56
15
11
15
56
1.66
22180--22207
12
2.3
12
100
0
56
50
32
17
0
1.47
24166--24208
21
2.0
21
86
0
59
27
20
20
30
1.98
29628--29674
26
1.9
24
87
12
69
40
4
27
27
1.75
30886--30948
15
4.2
15
78
11
67
36
22
26
14
1.92
31646--31798
74
2.1
74
98
0
297
25
15
15
43
1.86
33605--33698
49
2.0
48
87
8
138
28
19
5
46
1.71
34094--34261
31
5.5
31
68
18
129
32
22
20
25
1.97
34129--34229
29
3.4
29
67
20
82
31
21
21
24
1.98
34098--34260
60
2.7
60
97
0
299
33
22
20
23
1.97

Tables:   1

The End!