Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021425.1 Corchorus olitorius cultivar O-4 contig21458, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32917

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17350--17516
22
7.6
22
69
8
81
33
15
9
41
1.80
17509--17562
22
2.4
22
81
3
63
38
18
12
29
1.88
17601--17692
22
4.1
22
84
2
94
39
16
8
35
1.79
17614--17715
23
4.5
23
83
1
100
39
15
8
36
1.79
17720--17900
22
8.4
22
67
13
72
33
15
8
41
1.78
17759--17882
44
2.9
41
77
15
124
37
12
8
41
1.74
17802--17902
22
4.7
21
76
8
87
36
14
8
39
1.78
17983--18193
22
9.5
22
72
12
137
33
14
9
42
1.78
18270--18417
22
6.7
22
78
9
140
37
18
8
35
1.82
18256--18417
66
2.5
66
77
9
168
37
19
8
35
1.81
18260--18588
44
7.7
43
67
15
155
36
19
9
34
1.83
18422--18609
22
8.5
22
73
8
148
35
18
10
35
1.85
18422--18613
66
2.9
67
82
4
228
35
18
10
34
1.85
18888--18923
11
3.3
11
96
0
63
41
0
0
58
0.98
20347--20426
31
2.6
31
86
2
90
32
15
18
33
1.92
22387--22442
28
2.0
28
100
0
112
28
10
14
46
1.78
22394--22461
28
2.4
28
87
5
91
32
11
13
42
1.80
24227--24263
19
1.9
19
100
0
74
16
37
13
32
1.87
29092--29159
32
2.1
32
81
5
75
23
2
20
52
1.60
29652--29691
16
2.4
17
84
16
57
42
32
0
25
1.55
30175--30699
214
2.4
214
87
1
726
35
7
21
36
1.81
31176--32017
218
3.9
218
91
0
1274
35
20
7
36
1.81

Tables:   1

The End!