Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021426.1 Corchorus olitorius cultivar O-4 contig21459, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41656

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1345--1383
19
2.1
19
85
0
51
38
0
35
25
1.56
3245--3305
2
30.5
2
89
0
95
47
3
1
47
1.28
5858--5882
13
1.9
13
100
0
50
40
8
4
48
1.51
10526--10576
25
2.0
27
88
7
79
25
9
15
49
1.75
11040--11105
10
6.4
11
78
18
70
66
0
0
33
0.92
11046--11081
7
5.0
7
86
6
54
61
0
0
38
0.96
11038--11088
18
2.8
18
88
5
68
62
0
0
37
0.95
11047--11095
22
2.2
22
85
7
64
67
0
0
32
0.91
14558--14634
39
2.0
40
86
2
111
10
38
2
48
1.51
17470--17528
27
2.2
27
84
0
73
15
20
13
50
1.77
17478--17532
27
2.0
27
89
0
83
16
18
14
50
1.77
25597--25998
199
2.0
199
94
0
696
29
21
15
33
1.94
28669--28705
18
2.0
19
94
5
67
37
5
21
35
1.77
32338--32474
29
4.6
29
74
9
98
47
18
15
18
1.83
32406--32463
30
1.9
30
82
6
73
53
15
12
18
1.72
32646--32773
51
2.5
51
94
0
229
25
26
10
37
1.89

Tables:   1

The End!