Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021427.1 Corchorus olitorius cultivar O-4 contig21460, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3229
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28


Found at i:2776 original size:14 final size:15

Alignment explanation


    Indices: 2740--2777  Score: 53
    Period size: 13  Copynumber: 2.7  Consensus size: 15

       2730 CAAACACTGA

                          *
       2740 AAAATGCAACACAAT
          1 AAAATGCAACACAAC

                           
       2755 AAAA-GCAA-ACAAC
          1 AAAATGCAACACAAC

                      
       2768 AAAATGCAAC
          1 AAAATGCAAC

       2778 CAATTATTAT


Statistics
Matches: 20,  Mismatches: 1, Indels: 4
        0.80            0.04        0.16

Matches are distributed among these distances:
  13    8  0.40
  14    8  0.40
  15    4  0.20

ACGTcount: A:0.63, C:0.21, G:0.08, T:0.08


Consensus pattern (15 bp):   
AAAATGCAACACAAC
Done.