Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021428.1 Corchorus olitorius cultivar O-4 contig21461, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16939

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2193--2235
23
1.9
22
86
13
61
79
0
11
9
0.95
2195--2238
21
2.2
20
87
4
61
79
0
11
9
0.93
2307--2356
14
3.5
14
86
8
57
40
8
14
38
1.75
3038--3068
10
3.1
10
95
0
53
83
0
16
0
0.64
6592--6623
2
16.0
2
100
0
64
50
0
0
50
1.00
6642--6671
13
2.3
13
94
0
51
33
6
3
56
1.42
6934--6973
20
2.0
21
85
5
55
72
10
5
12
1.26
10213--10242
2
15.0
2
100
0
60
50
0
0
50
1.00
11447--11474
2
14.0
2
100
0
56
50
0
0
50
1.00
16021--16063
22
2.0
22
81
9
52
16
9
11
62
1.53

Tables:   1

The End!