Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021429.1 Corchorus olitorius cultivar O-4 contig21462, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4708
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:3882 original size:19 final size:18

Alignment explanation


    Indices: 3858--3893  Score: 63
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       3848 TGAAGACTTA

                               
       3858 TTGAAGACAATTTGAAGAT
          1 TTGAAGACAA-TTGAAGAT

                             
       3877 TTGAAGACAATTGAAGA
          1 TTGAAGACAATTGAAGA

       3894 ATTATTTTCA


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  18    7  0.41
  19   10  0.59

ACGTcount: A:0.44, C:0.06, G:0.22, T:0.28


Consensus pattern (18 bp):   
TTGAAGACAATTGAAGAT
Done.