Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002143.1 Corchorus olitorius cultivar O-4 contig02143, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1670
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:777 original size:27 final size:26

Alignment explanation


    Indices: 746--804  Score: 75
    Period size: 27  Copynumber: 2.2  Consensus size: 26

        736 GTACCTTTTT

                  *                     
        746 TTAAAATATATTTCTAA-ATTGTCATTA
          1 TTAAAAAATATTT-TAATATT-TCATTA

                                       
        773 TTAAAAAATATTTTAATTATTTCATTA
          1 TTAAAAAATATTTTAA-TATTTCATTA

                 
        800 TTAAA
          1 TTAAA

        805 CTAATGGAAA


Statistics
Matches: 29,  Mismatches: 1, Indels: 4
        0.85            0.03        0.12

Matches are distributed among these distances:
  26    3  0.10
  27   23  0.79
  28    3  0.10

ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49


Consensus pattern (26 bp):   
TTAAAAAATATTTTAATATTTCATTA
Done.