Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021430.1 Corchorus olitorius cultivar O-4 contig21463, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26884

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1020--1258
103
2.4
101
88
2
345
41
4
12
40
1.64
1020--1258
51
4.7
51
90
2
347
41
4
12
40
1.64
1245--1375
50
2.6
50
93
3
219
44
5
12
38
1.65
6886--7005
38
3.2
36
73
13
91
39
2
2
55
1.27
7200--7230
12
2.7
12
95
5
55
61
22
9
6
1.50
10603--10928
50
6.5
50
86
6
408
42
3
15
38
1.65
10606--10928
101
3.2
100
85
4
366
42
4
15
38
1.65
11556--12016
48
9.4
48
85
6
582
15
23
17
43
1.87
11892--12009
59
2.0
59
90
3
184
16
22
16
44
1.86
11954--12086
68
2.0
68
86
0
185
13
18
17
51
1.77
12058--12117
20
3.0
20
87
0
93
13
13
11
61
1.57
12145--12184
20
2.0
20
90
0
62
15
20
5
60
1.53
18316--18503
86
2.2
86
100
0
376
29
37
9
22
1.86
23654--23680
1
27.0
1
100
0
54
100
0
0
0
0.00

Tables:   1

The End!