Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021434.1 Corchorus olitorius cultivar O-4 contig21467, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2000
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.34


Found at i:1337 original size:16 final size:15

Alignment explanation


    Indices: 1316--1358  Score: 68
    Period size: 16  Copynumber: 2.7  Consensus size: 15

       1306 TTATTTTGCT

                            
       1316 TTGTTTTCTAGTTTAA
          1 TTGTTTTCT-GTTTAA

                            
       1332 TTGTTTTTCTGTTTAA
          1 TTG-TTTTCTGTTTAA

                       
       1348 TTGTTTTCTGT
          1 TTGTTTTCTGT

       1359 CAACCTCTGT


Statistics
Matches: 26,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  15    8  0.31
  16   12  0.46
  17    6  0.23

ACGTcount: A:0.12, C:0.07, G:0.14, T:0.67


Consensus pattern (15 bp):   
TTGTTTTCTGTTTAA

Done.