genome.fa.s21437.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021437.1 Corchorus olitorius cultivar O-4 contig21470, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97919

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1502--1536	13	2.6	13	95	4	61	2	14	28	54	1.54
2367--2395	15	1.9	15	100	0	58	6	62	10	20	1.50
3592--3632	20	2.0	20	100	0	82	9	31	4	53	1.55
4968--5128	82	2.0	82	96	0	295	32	10	16	39	1.83
5888--5946	27	2.2	25	80	13	73	27	3	20	49	1.65
6453--6518	24	2.7	26	75	11	68	63	1	1	33	1.13
6690--6722	16	2.1	15	94	5	57	27	48	18	6	1.71
6782--6841	16	3.8	15	78	12	59	33	38	20	8	1.82
6820--6864	23	2.0	23	90	0	72	31	35	20	13	1.91
7392--7473	42	2.0	42	95	0	146	39	19	4	36	1.73
7689--7734	16	2.9	16	83	0	65	30	39	21	8	1.84
7703--7747	23	2.0	23	90	0	72	31	40	17	11	1.85
8097--8260	44	3.7	44	94	1	276	22	12	27	37	1.91
8383--8469	27	3.0	28	90	10	122	31	18	6	43	1.76
8383--8571	34	5.9	32	84	10	210	31	16	7	44	1.75
9276--9395	60	2.0	60	85	1	159	21	20	10	47	1.79
12127--12175	26	1.9	25	83	4	62	24	26	6	42	1.78
14797--14849	25	2.1	26	89	3	81	32	18	9	39	1.83
15712--15813	37	2.7	39	85	13	142	34	5	9	50	1.60
15975--16087	57	2.0	57	98	0	217	23	9	23	43	1.83
19384--19426	21	2.0	21	95	0	77	60	13	0	25	1.34
20441--20469	13	2.1	14	93	6	51	34	0	24	41	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20729--20762	2	17.5	2	87	6	52	50	0	2	47	1.16
23462--23620	32	5.3	32	67	17	135	50	20	3	24	1.64
23447--23620	58	3.0	58	99	0	339	51	20	4	24	1.65
23494--23589	26	3.5	26	71	15	93	53	19	3	23	1.60
25181--25227	19	2.4	19	75	10	51	70	6	21	2	1.20
26415--26456	16	2.6	16	100	0	84	19	57	23	0	1.41
26447--26489	16	2.7	16	88	0	68	34	41	16	6	1.75
26497--26540	6	7.5	6	89	5	63	20	50	27	2	1.60
26479--26540	17	3.6	18	80	6	67	20	48	27	3	1.65
27330--27363	8	4.4	8	85	7	52	38	2	0	58	1.13
27492--27545	16	3.2	18	82	12	62	31	48	18	1	1.59
27518--27625	16	6.8	16	89	4	157	39	38	14	6	1.72
32584--32636	22	2.4	23	78	18	67	64	5	15	15	1.47
42982--43022	21	2.0	21	85	9	57	31	21	9	36	1.86
44527--44960	230	1.9	230	93	1	755	25	24	21	28	1.99
45312--45901	35	17.2	34	77	11	394	29	16	8	44	1.78
45487--45527	19	2.2	19	100	0	82	31	19	4	43	1.72
45453--45562	54	2.0	54	96	0	202	30	18	7	44	1.76
45385--45633	124	2.0	125	86	6	355	30	17	7	44	1.76
45417--45597	89	2.0	89	91	2	292	31	17	6	44	1.75
45506--45901	70	5.6	70	83	5	485	27	16	10	45	1.79
45507--45901	105	3.7	105	88	3	544	27	16	10	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45919--45953	15	2.4	15	90	4	54	42	5	22	28	1.76
46848--47754	35	25.8	36	86	5	1148	26	16	11	45	1.81
52976--53065	45	2.0	45	93	0	153	25	4	26	43	1.73
56683--56719	19	1.9	19	94	0	65	35	8	5	51	1.55
58373--58412	6	6.2	6	86	13	53	77	0	0	22	0.77
65028--65351	41	7.9	41	87	3	418	36	19	14	29	1.91
67904--67938	16	2.2	16	94	0	61	42	17	28	11	1.83
68034--68316	41	6.9	41	87	3	390	36	20	14	28	1.91
74714--74939	123	1.8	124	92	0	382	22	26	25	25	2.00
75141--75179	18	2.2	18	90	0	60	56	0	17	25	1.41
75361--75395	2	17.0	2	88	5	52	51	0	45	2	1.16
78821--78871	22	2.4	22	80	9	61	19	5	7	66	1.38
78821--78872	20	2.4	23	81	12	65	19	5	7	67	1.36
79757--79798	22	1.9	22	90	0	66	57	9	4	28	1.51
80143--80203	32	1.9	32	93	0	104	26	37	4	31	1.77
81094--81149	21	2.8	19	86	5	76	35	10	23	30	1.89
86891--87282	96	4.1	96	92	0	631	31	20	22	25	1.98
87298--87385	46	1.9	46	97	0	167	26	19	28	26	1.99
87301--87397	46	2.1	46	90	0	149	27	20	25	25	1.99
95968--96039	30	2.4	30	92	0	117	27	13	18	40	1.88

Tables:   1

The End!