Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021439.1 Corchorus olitorius cultivar O-4 contig21472, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18319

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
130--185
21
2.7
21
86
2
78
41
19
17
21
1.91
351--428
27
2.9
27
84
1
75
42
30
14
12
1.83
6192--6242
22
2.3
22
83
6
59
41
9
9
39
1.71
10597--10677
26
2.9
28
76
12
78
39
8
17
34
1.80
10757--10786
9
3.3
9
100
0
60
10
0
20
70
1.16
14225--14254
15
2.1
14
93
6
51
13
16
6
63
1.50
17877--18009
22
6.1
22
86
1
187
12
23
7
57
1.60
17881--18005
65
1.9
66
90
1
198
12
22
8
57
1.60
18021--18319
47
6.0
47
79
11
303
22
21
6
49
1.73
18021--18281
102
2.7
94
77
11
299
23
22
6
47
1.74
18039--18319
149
1.9
149
93
0
481
21
21
6
50
1.70

Tables:   1

The End!