Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021440.1 Corchorus olitorius cultivar O-4 contig21473, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12029
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34


Found at i:4461 original size:38 final size:37

Alignment explanation


    Indices: 4331--4501  Score: 234
    Period size: 37  Copynumber: 4.6  Consensus size: 37

       4321 TGAGGTCGAT

                                                 
       4331 CTTGATAACTGCTGAAAGATGACCTGTTTCCAGTCAA
          1 CTTGATAACTGCTGAAAGATGACCTGTTTCCAGTCAA

                    *          *   *        *    
       4368 CTTGATAATTGCTGAAAGAGGACATGTTTCCAATCAA
          1 CTTGATAACTGCTGAAAGATGACCTGTTTCCAGTCAA

                      *  *                       
       4405 CTTGATAACTACTAAAAGATGACCTGTTTCCAGTCAA
          1 CTTGATAACTGCTGAAAGATGACCTGTTTCCAGTCAA

                                  *         *   * 
       4442 TCTTGATAACTGCTGAAAGATGGCCTGTTTCCGGTCGA
          1 -CTTGATAACTGCTGAAAGATGACCTGTTTCCAGTCAA

                       *          
       4480 CTTTGATAACTACTGAAAGATG
          1 C-TTGATAACTGCTGAAAGATG

       4502 TTTGAGAAGA


Statistics
Matches: 116,  Mismatches: 16, Indels: 3
        0.86            0.12        0.02

Matches are distributed among these distances:
  37   65  0.56
  38   51  0.44

ACGTcount: A:0.31, C:0.19, G:0.19, T:0.30


Consensus pattern (37 bp):   
CTTGATAACTGCTGAAAGATGACCTGTTTCCAGTCAA
Done.