Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01021443.1 Corchorus olitorius cultivar O-4 contig21476, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3366
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40
Found at i:709 original size:307 final size:307
Alignment explanation
Indices: 2--3366 Score: 3797
Period size: 307 Copynumber: 10.9 Consensus size: 307
1 G
* * *
2 GGACTAACTATAATCATTTTGATGAGATTAGTCCATTGTGAAGTTTTTAGCTAATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
* * * * *
67 TGTTACTTGGGGCCTATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGACAAACCTC
66 TGTTATTTTGGGCCTATCGGGGCCCATTA-TTACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
* *
132 AATTCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTCGTGAGATTAGTCCACTGTGA
130 AATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGA
* *
197 AGAATTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGAGGTTTTG
195 AG-TTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACGTTTTG
*
262 AGTCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTAT
259 AATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTAT
* * *
311 GGACTAAATATAATCATTTTGGTAAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGCAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
* *
376 TGTTATTTT-GG--TAATCGGGCCCCATTATTTCTGTTTTGAATCGTCTTCGATTTGGCAAACCT
66 TGTTATTTTGGGCCT-ATCGGGGCCCATTATTAC-GTTTTGAATCGTCTTCGATTTGGCAAACCT
** * *
438 CAAAACTTTTCTTTCCATTTTTTATGGACTAACTATAATCATTTTGGTAAGATTAGTCCACTGTG
129 CAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTG
* * *
503 AAGTTTTTAGCTAATTTGGAACATTTGTTATTTGGGGCCTATCGAGGCCCATTAGTGACGTTTTG
194 AAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACGTTTTG
*
568 AATCGTCTTCGATTTGGCAAACCTCTATG-TTTTCTTTCCATTGTTTAT
259 AATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTAT
* * ** *
616 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGCGAAGTTTTTAGATTGTTTGGAAAACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
* * * *
681 TGTTATTTTGGGCCTATCGGGGCCCATTATTGACATATTGAATCCTCTTCGATTTGACAAACCTC
66 TGTTATTTTGGGCCTATCGGGGCCCATTATT-ACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
** * *
746 AATGCTTTTCTTTCCATTGTTTATACACTAACTATAATCATTTTGGTGAGATTAGTCTACTATGA
130 AATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGA
* * * * *
811 AGTTCTTAGCTCGTTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACATATTGA
195 AGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACGTTTTGA
*
876 ATCCTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTAT
260 ATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTAT
* ** *
924 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGATTGTTTGGAACTCT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
* * *
989 TGTTATTTTAGGACT-TCTGGGGCCCATTAGTTACGTTTTGAATCGACTTCGATTTGG-AAACCT
66 TGTTATTTTGGGCCTATC-GGGGCCCATTA-TTACGTTTTGAATCGTCTTCGATTTGGCAAACCT
* * * * ** * * *
1052 CAAAGTTTTTCTTT-AAGTTGTTTATGGCCTAGTTATAATCATTTTGATGAGATTAGTCTACTAT
129 CAATGCTTTTCTTTCCA-TTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGT
* * * **
1116 GAAGTTCTTAGCTCATTTGGAACTA-TTGTTATTTCGGGCCTATCGGGGCCCATTAGTTCCGTTT
193 GAAGTTTTTAGCTCATTTGGAAC-ACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACGTTT
*
1180 TGAATCGTTTTCGATTTGGCAAACCTCAATGCTTTTCTTTCC--TG---AT
257 TGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTAT
* ** * * * * ** *
1226 GCG-CCAAGGACTCATCATGGTCTTGAAGGGCACAATGGAGAT-CA-TG-GAGAGGATGT-G--C
1 G-GACTAACTA-TAATCAT--T-TTG--GTG-A-GAT-TAG-TCCACTGTGA-AGTTTTTAGCTC
* * ** ** * * * * ** ** ** ** * * * *
1284 ATATGCG-GCA-AGGAGACTTGGAGAAGCTTGA-AGATGCTGAGGAAGAAG-TTTCAAGC-TCAT
54 ATTTG-GAACACTTGTTATTTTG-G--GCCT-ATCGGGGCCCATTATTACGTTTTGAATCGTCTT
* ** * **** * ** * *
1344 CAGAGTT-GCTTAAGATGCCATTTGATCCATTGAAGATGCCATTAGGTCCAAT-GACAAGAGTAT
114 C-GATTTGGC--AA-A--CC--TCAATGC-TT-TTCTTTCCATT--GT-TTATGGACTA-ACTAT
** * *** * *** * *
1407 GAGCCAAAATATTCAAG-GATTCA-T-TACTG-GGCCTTGTTAGAACTCATCTT-GAAGACTTG-
165 -A---ATCATTTTGGTGAGATT-AGTCCACTGTGAAGTTTTTAG--CTCAT-TTGGAACACTTGT
* * * * * * *
1466 -A----AGGCC-ATCGTA-GCTCATTTGAAGA-GCTTTG-A--GTC-T--A-AT-AC-AA-CT-A
222 TATTTTGGGCCTATCG-AGGCCCATTAG-TGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCA
* * * *
1512 GATTCGTATCATTTCCATTGTTTAG
285 -ATGCTTTTC-TTTCCATTGTTTAT
* *
1537 GGACTAACTATAATCATTTTGATGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
*
1602 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTC
66 TGTTATTTTGGGCCTATCGGGGCCCATTA-TTACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
** * * *
1667 AATGCTTTTCTTTATATTGTATATGGCCTAACTATAATCAATTTGGTGAGATTAGT-CACTGTGA
130 AATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGA
* * **
1731 AGTTCTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGA
195 AGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACGTTTTGA
* * * **
1796 ATCGTCTTCGATTTGGTAAACCTCAAAGTTTTTCTTTATATTGTTTAT
260 ATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTAT
* * * *
1844 GGCCTAACTATAATCAATTTGGTGAGATTAGTCCACTGTGAAGTTCTTAGATCATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
*
1909 TGTTATTTTGGGCCTATCGGGGCCCATT-TGTGACATTTTGAATCGTCTTCGATTTGGCAAACCT
66 TGTTATTTTGGGCCTATCGGGGCCCATTAT-T-ACGTTTTGAATCGTCTTCGATTTGGCAAACCT
1973 CAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTG
129 CAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTG
*
2038 AAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACATTTTG
194 AAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACGTTTTG
*
2103 AATCGTCTTCGATTTGGCAAACCTCAATGCTTTTTCTTTCCATTTTTTTAT
259 AATCGTCTTCGATTTGGCAAACCTCAATGC-TTTTCTTTCCA-TTGTTTAT
*
2154 GGACTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTTAGCTCATTTGGAACAC
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAG-TTTTTAGCTCATTTGGAACAC
* * * *
2219 TTGTTATTTTTAGGCCTTTTCGAGGCCCATTAGTTCCGTTTTTGAATCGTCTTCGATTTGGCAAA
65 TTGTTA-TTTTGGGCC-TATCGGGGCCCATTA-TTACG-TTTTGAATCGTCTTCGATTTGGCAAA
*
2284 CCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTCGGTGAGATTAGTCCACT
126 CCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACT
* ** * *
2349 GTGAAGTTTTTAGATTGTTTGGAACACTTGTTATTTGGGGCCTATCGATGCCCATTAGTGACGTT
191 GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACGTT
*
2414 TTGAATCGTCTTCGATTTGGCAAACCTCAACGCTTTTCTTTCCATTGTTTAT
256 TTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTAT
*
2466 GGACTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
*
2531 TGTTATTTTGGGCCTATTGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGG-AAACCTC
66 TGTTATTTTGGGCCTATCGGGGCCCATTA-TTACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
* * * * ** *
2595 AAAGTTTTTCTTT-AAGTTGTTTATGGCCTAGTTATAATCATTTTGATGAGATTAGTCCACTGTG
130 AATGCTTTTCTTTCCA-TTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTG
* * * **
2659 AAGTTTTTAGCTCATTTGGAACACTTGTTATTTTAGGCCTTTCGGGGCCCATTAGTTCCGTTTTG
194 AAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACGTTTTG
2724 AATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTAT
259 AATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTAT
* *
2773 GGACTAACTATAATCATTTTGGTGAGATTAGTACACTGTGAAGTTTTTAGCTAATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
* *
2838 TGTTATTTGGGGCCTATCGGGGCCCATTAGTT-CTGTTTTGAATCGTCTTTGATTTGGCAAACCT
66 TGTTATTTTGGGCCTATCGGGGCCCATTA-TTAC-GTTTTGAATCGTCTTCGATTTGGCAAACCT
* * *
2902 CAAAGCTTTTCTTTCCATTTTTTATGGACTAACTATAATCATTTTGGTAAGATTAGTCCACTGTG
129 CAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTG
* * *
2967 AAGTTTTTAGCTAATTTGGAACACTTGTTATTTGGGGCCTATCGATGCCCATTAGTGACGTTTTG
194 AAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACGTTTTG
3032 AATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTAT
259 AATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTAT
*
3081 GGACTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
*
3146 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTCAATCGTCTTCGATTTGG-AAACCTC
66 TGTTATTTTGGGCCTATCGGGGCCCATTA-TTACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
* * * * ** * * *
3210 AAAGTTTTTCTTT-AAGTTGTTTATGGCCTAGTTATAATCATTTTGATGAGATTAGTCTACTATG
130 AATGCTTTTCTTTCCA-TTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTG
* ** * **
3274 AAGTTCTTAGCTCATTTGGAACACTTGTTATTTCAGGCCTATCGGGGCCCATTAGTTCCGTTTTG
194 AAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACGTTTTG
3339 AATCGTCTTCGATTTGGCAAACCTCAAT
259 AATCGTCTTCGATTTGGCAAACCTCAAT
Statistics
Matches: 2576, Mismatches: 361, Indels: 240
0.81 0.11 0.08
Matches are distributed among these distances:
290 2 0.00
291 19 0.01
292 9 0.00
293 8 0.00
294 1 0.00
295 6 0.00
296 5 0.00
297 4 0.00
298 20 0.01
299 3 0.00
300 4 0.00
301 4 0.00
302 14 0.01
303 16 0.01
304 15 0.01
305 103 0.04
306 130 0.05
307 1077 0.42
308 542 0.21
309 111 0.04
310 71 0.03
311 63 0.02
312 63 0.02
313 24 0.01
314 185 0.07
315 19 0.01
316 7 0.00
317 1 0.00
318 5 0.00
319 5 0.00
320 9 0.00
321 5 0.00
322 16 0.01
323 10 0.00
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.40
Consensus pattern (307 bp):
GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
TGTTATTTTGGGCCTATCGGGGCCCATTATTACGTTTTGAATCGTCTTCGATTTGGCAAACCTCA
ATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAA
GTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACGTTTTGAA
TCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTAT
Found at i:827 original size:154 final size:154
Alignment explanation
Indices: 2--3366 Score: 3815
Period size: 154 Copynumber: 21.9 Consensus size: 154
1 G
* * *
2 GGACTAACTATAATCATTTTGATGAGATTAGTCCATTGTGAAGTTTTTAGCTAATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
* * * * *
67 TGTTACTTGGGGCCTATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGACAAACCTC
66 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
*
132 AATTCTTTTCTTTCCATTGTTTAT
131 AATGCTTTTCTTTCCATTGTTTAT
* *
156 GGACTAACTATAATCATTTTCGTGAGATTAGTCCACTGTGAAGAATTTTAGCTCATTTGGAACAC
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAG-TTTTTAGCTCATTTGGAACAC
* * * *
221 TTGTTATTTTGGGCCTATCGAGGCCCATTAGTGAGGTTTTGAGTCGTCTTCGATTTGGCAAACCT
65 TTGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCT
286 CAATGCTTTTCTTTCCATTGTTTAT
130 CAATGCTTTTCTTTCCATTGTTTAT
* * *
311 GGACTAAATATAATCATTTTGGTAAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGCAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
* *
376 TGTTATTTT-GG--TAATCGGGCCCCATTA-TTTCTGTTTTGAATCGTCTTCGATTTGGCAAACC
66 TGTTATTTTGGGCCT-ATCGGGGCCCATTAGTTAC-GTTTTGAATCGTCTTCGATTTGGCAAACC
** *
437 TCAAAACTTTTCTTTCCATTTTTTAT
129 TCAATGCTTTTCTTTCCATTGTTTAT
* * *
463 GGACTAACTATAATCATTTTGGTAAGATTAGTCCACTGTGAAGTTTTTAGCTAATTTGGAACATT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
* * *
528 TGTTATTTGGGGCCTATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
66 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
*
593 TATG-TTTTCTTTCCATTGTTTAT
131 AATGCTTTTCTTTCCATTGTTTAT
* * ** *
616 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGCGAAGTTTTTAGATTGTTTGGAAAACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
* * * *
681 TGTTATTTTGGGCCTATCGGGGCCCATTA-TTGACATATTGAATCCTCTTCGATTTGACAAACCT
66 TGTTATTTTGGGCCTATCGGGGCCCATTAGTT-ACGTTTTGAATCGTCTTCGATTTGGCAAACCT
745 CAATGCTTTTCTTTCCATTGTTTAT
130 CAATGCTTTTCTTTCCATTGTTTAT
** * * * *
770 ACACTAACTATAATCATTTTGGTGAGATTAGTCTACTATGAAGTTCTTAGCTCGTTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
* * * *
835 TGTTATTTTGGGCCTATCGGGGCCCATTAGTGACATATTGAATCCTCTTCGATTTGGCAAACCTC
66 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
900 AATGCTTTTCTTTCCATTGTTTAT
131 AATGCTTTTCTTTCCATTGTTTAT
* ** *
924 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGATTGTTTGGAACTCT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
* * *
989 TGTTATTTTAGGACT-TCTGGGGCCCATTAGTTACGTTTTGAATCGACTTCGATTTGG-AAACCT
66 TGTTATTTTGGGCCTATC-GGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCT
* * *
1052 CAAAGTTTTTCTTT-AAGTTGTTTAT
130 CAATGCTTTTCTTTCCA-TTGTTTAT
* ** * * * *
1077 GGCCTAGTTATAATCATTTTGATGAGATTAGTCTACTATGAAGTTCTTAGCTCATTTGGAACTA-
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC-AC
* * *
1141 TTGTTATTTCGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTTTTCGATTTGGCAAACCT
65 TTGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCT
1206 CAATGCTTTTCTTTCC--TG---AT
130 CAATGCTTTTCTTTCCATTGTTTAT
* ** * * * * ** *
1226 GCG-CCAAGGACTCATCATGGTCTTGAAGGGCACAATGGAGAT-CA-TG-GAGAGGATGT-G--C
1 G-GACTAACTA-TAATCAT--T-TTG--GTG-A-GAT-TAG-TCCACTGTGA-AGTTTTTAGCTC
* * ** ** * * * * ** ** ** * * *
1284 ATATGCG-GCA-AGGAGACTTGGAGAAGCTTGA-AGATGCTGAGGAAG--AAG-TTTCAAGC-TC
54 ATTTG-GAACACTTGTTATTTTG-G--GCCT-ATCGGGGCCCA-TTAGTTACGTTTTGAATCGTC
* * ** * **** * **
1342 ATCAGAGTT-GCTTAAGATGCCATTTGATCCATTGAAGATGCCATTAGGTCCAAT
113 TTC-GATTTGGC--AA-A--CC--TCAATGC-TT-TTCTTTCCATT--GT-TTAT
* * ** *** ** * ** * *** *
1396 -GACAAGAGTATGAGCCAAAATATTCAAGGATTCAT-TACTG-GGCCTTGTTAGAACTCATCTT-
1 GGACTA-ACTAT-AATCATTTTGGT-GA-GATTAGTCCACTGTGAAGTTTTTAG--CTCAT-TTG
* * ** * * * * * * *
1457 GAAGACTTG--A----AGGCC-ATCGTAGCTCATTTG-AAGAGCTTTG-A--GTC-T--A-AT-A
59 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTA-CGTTTTGAATCGTCTTCGATTTGG
* * * *
1506 C-AA-CT-AGATTCGTATCATTTCCATTGTTTAG
123 CAAACCTCA-ATGCTTTTC-TTTCCATTGTTTAT
* *
1537 GGACTAACTATAATCATTTTGATGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
*
1602 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTC
66 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
** *
1667 AATGCTTTTCTTTATATTGTATAT
131 AATGCTTTTCTTTCCATTGTTTAT
* * *
1691 GGCCTAACTATAATCAATTTGGTGAGATTAGT-CACTGTGAAGTTCTTAGCTCATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
* *
1755 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGTAAACCTC
66 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
* * **
1820 AAAGTTTTTCTTTATATTGTTTAT
131 AATGCTTTTCTTTCCATTGTTTAT
* * * *
1844 GGCCTAACTATAATCAATTTGGTGAGATTAGTCCACTGTGAAGTTCTTAGATCATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
* * *
1909 TGTTATTTTGGGCCTATCGGGGCCCATTTGTGACATTTTGAATCGTCTTCGATTTGGCAAACCTC
66 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
1974 AATGCTTTTCTTTCCATTGTTTAT
131 AATGCTTTTCTTTCCATTGTTTAT
1998 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
* * *
2063 TGTTATTTTGGGCCTATCGAGGCCCATTAGTGACATTTTGAATCGTCTTCGATTTGGCAAACCTC
66 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
*
2128 AATGCTTTTTCTTTCCATTTTTTTAT
131 AATGC-TTTTCTTTCCA-TTGTTTAT
*
2154 GGACTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTTAGCTCATTTGGAACAC
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAG-TTTTTAGCTCATTTGGAACAC
* * * *
2219 TTGTTATTTTTAGGCCTTTTCGAGGCCCATTAGTTCCGTTTTTGAATCGTCTTCGATTTGGCAAA
65 TTGTTA-TTTTGGGCC-TATCGGGGCCCATTAGTTACG-TTTTGAATCGTCTTCGATTTGGCAAA
2284 CCTCAATGCTTTTCTTTCCATTGTTTAT
127 CCTCAATGCTTTTCTTTCCATTGTTTAT
* * **
2312 GGACTAACTATAATCATTTCGGTGAGATTAGTCCACTGTGAAGTTTTTAGATTGTTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
* ** *
2377 TGTTATTTGGGGCCTATCGATGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
66 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
*
2442 AACGCTTTTCTTTCCATTGTTTAT
131 AATGCTTTTCTTTCCATTGTTTAT
*
2466 GGACTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
*
2531 TGTTATTTTGGGCCTATTGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGG-AAACCTC
66 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
* * *
2595 AAAGTTTTTCTTT-AAGTTGTTTAT
131 AATGCTTTTCTTTCCA-TTGTTTAT
* ** *
2619 GGCCTAGTTATAATCATTTTGATGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
* * *
2684 TGTTATTTTAGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTC
66 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
2749 AATGCTTTTCTTTCCATTGTTTAT
131 AATGCTTTTCTTTCCATTGTTTAT
* *
2773 GGACTAACTATAATCATTTTGGTGAGATTAGTACACTGTGAAGTTTTTAGCTAATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
* *
2838 TGTTATTTGGGGCCTATCGGGGCCCATTAGTT-CTGTTTTGAATCGTCTTTGATTTGGCAAACCT
66 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTAC-GTTTTGAATCGTCTTCGATTTGGCAAACCT
* *
2902 CAAAGCTTTTCTTTCCATTTTTTAT
130 CAATGCTTTTCTTTCCATTGTTTAT
* *
2927 GGACTAACTATAATCATTTTGGTAAGATTAGTCCACTGTGAAGTTTTTAGCTAATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
* ** *
2992 TGTTATTTGGGGCCTATCGATGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
66 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
3057 AATGCTTTTCTTTCCATTGTTTAT
131 AATGCTTTTCTTTCCATTGTTTAT
*
3081 GGACTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
*
3146 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTCAATCGTCTTCGATTTGG-AAACCTC
66 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
* * *
3210 AAAGTTTTTCTTT-AAGTTGTTTAT
131 AATGCTTTTCTTTCCA-TTGTTTAT
* ** * * * *
3234 GGCCTAGTTATAATCATTTTGATGAGATTAGTCTACTATGAAGTTCTTAGCTCATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
** *
3299 TGTTATTTCAGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTC
66 TGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
3364 AAT
131 AAT
Statistics
Matches: 2751, Mismatches: 351, Indels: 218
0.83 0.11 0.07
Matches are distributed among these distances:
137 2 0.00
138 18 0.01
139 4 0.00
140 13 0.00
141 5 0.00
142 6 0.00
143 1 0.00
144 11 0.00
145 20 0.01
146 1 0.00
147 1 0.00
148 3 0.00
149 7 0.00
150 8 0.00
151 4 0.00
152 140 0.05
153 706 0.26
154 1295 0.47
155 191 0.07
156 69 0.03
157 60 0.02
158 64 0.02
159 37 0.01
160 44 0.02
161 5 0.00
162 4 0.00
163 3 0.00
164 5 0.00
165 3 0.00
166 1 0.00
167 3 0.00
168 5 0.00
169 5 0.00
170 7 0.00
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.40
Consensus pattern (154 bp):
GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACT
TGTTATTTTGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
AATGCTTTTCTTTCCATTGTTTAT
Found at i:886 original size:461 final size:459
Alignment explanation
Indices: 2--3366 Score: 3074
Period size: 461 Copynumber: 7.3 Consensus size: 459
1 G
* * *
2 GGACTAACTATAATCATTTTGATGAGATTAGTCCATTGTGAAGTTTTTAGCTAATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTAATTTGGAACATT
* *
67 TGTTACTTGGGGCCTATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGACAAACCTC
66 TGTTATTTGGGGCCTATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
* *
132 AATTCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTCGTGAGATTAGTCCACTGTGA
131 AA-TGTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGA
* * * * *
197 AGAATTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGAGGTTTTG
195 AG-TTTTTAGCTCATTTGGAAAACTTGTTATTTTGGGCCTATCGGGGCCCATTATTGACGTTTTG
* **
262 AGTCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAAATATAATCA
259 AATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATACACTAAATATAATCA
* *
327 TTTTGGTAAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGCAACACTTGTTATTTTGGTAATC
324 TTTTGGTAAGATTAGTCCACTATGAAGTTCTTAGCTCATTTGCAACACTTGTTATTTTGGTAATC
** * * *
392 GGGCCCCATTATTTCTGTTTTGAATCGTCTTCGATTTGGCAAACCTCAAAACTTTTCTTTCCATT
389 GGGCCCCATTATGACTATATTGAATCCTCTTCGATTTGGCAAACCTCAAAACTTTTCTTTCCATT
*
457 TTTTAT
454 GTTTAT
*
463 GGACTAACTATAATCATTTTGGTAAGATTAGTCCACTGTGAAGTTTTTAGCTAATTTGGAACATT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTAATTTGGAACATT
528 TGTTATTTGGGGCCTATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
66 TGTTATTTGGGGCCTATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
* *
593 TATGTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGCGAA
131 AATGTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAA
* ** * *
658 GTTTTTAGATTGTTTGGAAAACTTGTTATTTTGGGCCTATCGGGGCCCATTATTGACATATTGAA
196 GTTTTTAGCTCATTTGGAAAACTTGTTATTTTGGGCCTATCGGGGCCCATTATTGACGTTTTGAA
* * *
723 TCCTCTTCGATTTGACAAACCTCAATGCTTTTCTTTCCATTGTTTATACACTAACTATAATCATT
261 TCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATACACTAAATATAATCATT
* * * *
788 TTGGTGAGATTAGTCTACTATGAAGTTCTTAGCTCGTTTGGAACACTTGTTATTTTGGGCCT-AT
326 TTGGTAAGATTAGTCCACTATGAAGTTCTTAGCTCATTTGCAACACTTGTTATTTT-GG--TAAT
* **
852 CGGGGCCCATTAGTGAC-ATATTGAATCCTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCA
388 CGGGCCCCATTA-TGACTATATTGAATCCTCTTCGATTTGGCAAACCTCAAAACTTTTCTTTCCA
916 TTGTTTAT
452 TTGTTTAT
* **
924 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGATTGTTTGGAAC-TC
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTAATTTGGAACAT-
** * * * *
988 TTGTTATTTTAGGACT-TCTGGGGCCCATTAGTTACGTTTTGAATCGACTTCGATTTGG-AAACC
65 TTGTTATTTGGGGCCTATC-GAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACC
* * * ** * * *
1051 TCAAAGTTTTTCTTT-AAGTTGTTTATGGCCTAGTTATAATCATTTTGATGAGATTAGTCTACTA
129 TCAATG-TTTTCTTTCCA-TTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTG
* * * *
1115 TGAAGTTCTTAGCTCATTTGGAACTA-TTGTTATTTCGGGCCTATCGGGGCCCATTAGTT-CCGT
192 TGAAGTTTTTAGCTCATTTGGAA-AACTTGTTATTTTGGGCCTATCGGGGCCCATTA-TTGACGT
* * * * **
1178 TTTGAATCGTTTTCGATTTGGCAAACCTCAATGCTTTTCTTTCC--TG---ATGCGCCAAGGACT
255 TTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATACACTAAATA-T
* ** ** * * * * *** * * ** *
1238 CATCA---TGGTCTTGA--AGGGCACAATGGAGATCATGGAGAGGATGTGCATATGCGGCAAG-G
319 AATCATTTTGGT-AAGATTAGTCCACTATGAAGTTC-T-TAGCTCATTTGCA-A--C-ACTTGTT
** * * * *** * * ** * * * *
1297 AGACTTGGAGAAGCTTGAAGATGC-TGAGGAAGA-AGTTTCAA-GCTCATCAGAGTT-GCTTAAG
377 A-TTTTGG-TAA--TCG-GGCCCCATTATGACTATA--TTGAATCCTCTTC-GATTTGGC--AA-
** ** **** * **
1358 ATGCCATTTGATCCATTGAAGATGCCATTAGGTCCAAT
431 A--CC--TCAAAAC-TT-TTCTTTCCATT--GT-TTAT
* * ** * *** * *** * *
1396 -GACAAGAGTATGAGCCAAAATATTCAAG-GATTCA-T-TACTG-GGCCTTGTTAGAACTCATCT
1 GGACTA-ACTAT-A---ATCATTTTGGTGAGATT-AGTCCACTGTGAAGTTTTTAG--CTAAT-T
* * * * * * * *
1456 T-GAAGACTTG--A----AGGCC-ATCGTA-GCTCATTTGAAGA-GCTTTG-A--GTC-T--A-A
57 TGGAACATTTGTTATTTGGGGCCTATCG-AGGCCCATTAG-TGACGTTTTGAATCGTCTTCGATT
* * * *
1504 T-AC-AA-CT-AGAT-TCGTATCATTTCCATTGTTTAGGGACTAACTATAATCATTTTGATGAGA
120 TGGCAAACCTCA-ATGT--TTTC-TTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGA
* *
1564 TTAGTCCATTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCAT
181 TTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAAAACTTGTTATTTTGGGCCTATCGGGGCCCAT
* ** * *
1629 TAGTT-CCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTATATTGTATATGG
246 TA-TTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTAT-A
* * * * *
1693 C-CTAACTATAATCAATTTGGTGAGATTAGT-CACTGTGAAGTTCTTAGCTCATTTGGAACACTT
309 CACTAAATATAATCATTTTGGTAAGATTAGTCCACTATGAAGTTCTTAGCTCATTTGCAACACTT
* ** * *
1756 GTTATTTTGGGCCT-ATCGGGGCCCATTAGTTCCGT-T-TTGAATCGTCTTCGATTTGGTAAACC
374 GTTATTTT-GG--TAATCGGGCCCCATTA-TGAC-TATATTGAATCCTCTTCGATTTGGCAAACC
** **
1818 TCAAAGTTTTTCTTTATATTGTTTAT
434 TCAAAACTTTTCTTTCCATTGTTTAT
* * * * * *
1844 GGCCTAACTATAATCAATTTGGTGAGATTAGTCCACTGTGAAGTTCTTAGATCATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTAATTTGGAACATT
* * * *
1909 TGTTATTTTGGGCCTATCGGGGCCCATTTGTGACATTTTGAATCGTCTTCGATTTGGCAAACCTC
66 TGTTATTTGGGGCCTATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
1974 AATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGA
131 AATG-TTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGA
* * * *
2039 AGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAGTGACATTTTGA
195 AGTTTTTAGCTCATTTGGAAAACTTGTTATTTTGGGCCTATCGGGGCCCATTATTGACGTTTTGA
* ** *
2104 ATCGTCTTCGATTTGGCAAACCTCAATGCTTTTTCTTTCCATTTTTTTATGGACTAACTATAATC
260 ATCGTCTTCGATTTGGCAAACCTCAATGC-TTTTCTTTCCA-TTGTTTATACACTAAATATAATC
* * * * *
2169 ATTTTGGTGAGATTAGTCCATTGTGAAGTTTTTTAGCTCATTTGGAACACTTGTTATTTTTAGGC
323 ATTTTGGTAAGATTAGTCCACTATGAAG-TTCTTAGCTCATTTGCAACACTTGTTA-TTTT-GG-
** ** * * **
2234 CTTTTCGAGG-CCCATTAGTTCCGT-TTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTT
384 -TAATCG-GGCCCCATTA-TGAC-TATATTGAATCCTCTTCGATTTGGCAAACCTCAAAACTTTT
2297 CTTTCCATTGTTTAT
445 CTTTCCATTGTTTAT
* * ** *
2312 GGACTAACTATAATCATTTCGGTGAGATTAGTCCACTGTGAAGTTTTTAGATTGTTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTAATTTGGAACATT
*
2377 TGTTATTTGGGGCCTATCGATGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
66 TGTTATTTGGGGCCTATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
* *
2442 AACGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCATTGTGA
131 AATG-TTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGA
* *
2507 AGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATTGGGGCCCATTAGTT-ACGTTTTG
195 AGTTTTTAGCTCATTTGGAAAACTTGTTATTTTGGGCCTATCGGGGCCCATTA-TTGACGTTTTG
* * * * **
2571 AATCGTCTTCGATTTGG-AAACCTCAAAGTTTTTCTTT-AAGTTGTTTATGGC-CTAGTTATAAT
259 AATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCA-TTGTTTAT-ACACTAAATATAAT
* * * * *
2633 CATTTTGATGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTAGGCC
322 CATTTTGGTAAGATTAGTCCACTATGAAGTTCTTAGCTCATTTGCAACACTTGTTATTTT-GG--
* * ** * **
2698 T-TTCGGGGCCCATTAGTTCCGT-T-TTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCT
384 TAATCGGGCCCCATTA-TGAC-TATATTGAATCCTCTTCGATTTGGCAAACCTCAAAACTTTTCT
2760 TTCCATTGTTTAT
447 TTCCATTGTTTAT
* *
2773 GGACTAACTATAATCATTTTGGTGAGATTAGTACACTGTGAAGTTTTTAGCTAATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTAATTTGGAACATT
* * *
2838 TGTTATTTGGGGCCTATCGGGGCCCATTAGT-TCTGTTTTGAATCGTCTTTGATTTGGCAAACCT
66 TGTTATTTGGGGCCTATCGAGGCCCATTAGTGAC-GTTTTGAATCGTCTTCGATTTGGCAAACCT
* * *
2902 CAAAGCTTTTCTTTCCATTTTTTATGGACTAACTATAATCATTTTGGTAAGATTAGTCCACTGTG
130 CAATG-TTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTG
* * * ** *
2967 AAGTTTTTAGCTAATTTGGAACACTTGTTATTTGGGGCCTATCGATGCCCATTAGTGACGTTTTG
194 AAGTTTTTAGCTCATTTGGAAAACTTGTTATTTTGGGCCTATCGGGGCCCATTATTGACGTTTTG
** *
3032 AATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCA
259 AATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATACACTAAATATAATCA
* * * * *
3097 TTTTGGTGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCT-
324 TTTTGGTAAGATTAGTCCACTATGAAGTTCTTAGCTCATTTGCAACACTTGTTATTTT-GG--TA
* * * * **
3161 ATCGGGGCCCATTAGTTACGT-T-TTCAATCGTCTTCGATTTGG-AAACCTCAAAGTTTTTCTTT
386 ATCGGGCCCCATTA-TGAC-TATATTGAATCCTCTTCGATTTGGCAAACCTCAAAACTTTTCTTT
*
3223 -AAGTTGTTTAT
449 CCA-TTGTTTAT
* ** * * * * * *
3234 GGCCTAGTTATAATCATTTTGATGAGATTAGTCTACTATGAAGTTCTTAGCTCATTTGGAACACT
1 GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTAATTTGGAACATT
** * **
3299 TGTTATTTCAGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTC
66 TGTTATTTGGGGCCTATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
3364 AAT
131 AAT
Statistics
Matches: 2430, Mismatches: 347, Indels: 254
0.80 0.11 0.08
Matches are distributed among these distances:
444 8 0.00
445 17 0.01
446 4 0.00
447 9 0.00
448 6 0.00
449 5 0.00
451 10 0.00
452 18 0.01
453 14 0.01
454 5 0.00
455 13 0.01
456 9 0.00
457 7 0.00
458 9 0.00
459 190 0.08
460 245 0.10
461 1040 0.43
462 190 0.08
463 47 0.02
464 44 0.02
465 87 0.04
466 23 0.01
467 46 0.02
468 323 0.13
469 14 0.01
471 6 0.00
472 6 0.00
473 9 0.00
474 4 0.00
475 13 0.01
476 9 0.00
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.40
Consensus pattern (459 bp):
GGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTAATTTGGAACATT
TGTTATTTGGGGCCTATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTC
AATGTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAA
GTTTTTAGCTCATTTGGAAAACTTGTTATTTTGGGCCTATCGGGGCCCATTATTGACGTTTTGAA
TCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATACACTAAATATAATCATT
TTGGTAAGATTAGTCCACTATGAAGTTCTTAGCTCATTTGCAACACTTGTTATTTTGGTAATCGG
GCCCCATTATGACTATATTGAATCCTCTTCGATTTGGCAAACCTCAAAACTTTTCTTTCCATTGT
TTAT
Done.