Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021446.1 Corchorus olitorius cultivar O-4 contig21479, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16530

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--36
2
17.0
2
100
0
68
0
50
0
50
1.00
36--74
2
19.5
2
89
0
60
46
48
2
2
1.29
947--986
18
2.2
18
100
0
80
15
35
15
35
1.88
1903--1929
6
4.5
6
100
0
54
29
37
0
33
1.58
2231--2268
2
19.0
2
100
0
76
50
0
0
50
1.00
3564--3605
21
2.0
21
100
0
84
42
9
19
28
1.82
3616--3655
20
2.0
20
100
0
80
60
0
20
20
1.37
3864--4318
178
2.6
177
82
3
522
32
14
16
35
1.89
4858--4904
6
7.5
6
90
9
76
48
14
0
36
1.44
4850--4898
20
2.5
20
90
10
82
48
14
0
36
1.44
4858--4903
13
3.6
13
97
2
85
47
15
0
36
1.45
4850--4904
19
2.8
19
91
8
85
49
14
0
36
1.44
10294--10333
20
2.0
20
90
0
62
5
20
12
62
1.48
11505--11570
3
22.7
3
90
6
109
31
0
1
66
1.01
13335--13361
9
3.0
9
100
0
54
33
11
33
22
1.89
13889--13921
16
2.1
16
94
0
57
21
27
9
42
1.83

Tables:   1

The End!