Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021452.1 Corchorus olitorius cultivar O-4 contig21485, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70332

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7649--7682
4
8.5
4
87
12
52
26
0
0
73
0.83
7616--7729
60
1.9
57
87
5
165
31
4
6
57
1.43
8413--8462
19
2.6
19
83
0
73
24
8
32
36
1.84
8455--8525
32
2.2
32
90
5
108
22
0
36
40
1.54
8455--8525
16
4.4
16
80
0
88
22
0
36
40
1.54
10129--10181
22
2.4
22
81
6
63
18
7
11
62
1.52
17519--17543
11
2.3
11
100
0
50
8
0
28
64
1.22
17692--17763
31
2.3
31
97
0
135
20
2
20
55
1.56
18494--18523
16
1.9
16
93
6
53
36
3
13
46
1.60
20102--20154
22
2.4
22
81
6
63
18
7
11
62
1.52
26414--26480
27
2.5
28
76
9
77
32
13
23
29
1.93
30233--30273
21
2.0
21
90
9
66
34
9
24
31
1.88
34128--34162
17
2.1
17
88
0
52
40
14
8
37
1.76
37473--37523
25
2.1
24
88
3
75
50
5
25
17
1.68
37664--37736
35
2.1
35
97
0
137
58
16
9
15
1.61
38084--38212
28
4.6
28
85
2
161
34
27
19
19
1.96
38084--38212
56
2.3
56
86
4
179
34
27
19
19
1.96
41117--41158
7
6.0
7
97
0
75
40
0
2
57
1.12
41119--41203
7
11.9
7
78
13
57
42
0
7
50
1.29
41161--41187
13
2.1
13
100
0
54
44
0
14
40
1.46
41140--41203
28
2.2
31
78
13
73
42
0
9
48
1.35
44261--44310
22
2.3
22
89
0
73
16
58
18
8
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46011--46080
22
3.2
22
74
12
72
35
2
1
60
1.21
47060--47097
15
2.6
15
87
4
51
42
0
7
50
1.31
52018--52053
16
2.2
16
100
0
72
33
11
19
36
1.87
56839--57005
51
3.5
51
71
17
185
13
28
23
34
1.92
56831--57008
91
2.0
91
95
0
320
14
28
21
34
1.93
57024--57123
41
2.4
41
83
0
128
18
27
15
40
1.89
60299--60383
5
18.0
5
84
13
110
81
17
1
0
0.76
64455--64487
7
4.7
7
85
14
50
87
0
0
12
0.53
64454--64487
15
2.3
15
95
5
61
88
0
0
11
0.52
64453--64487
14
2.3
16
85
14
56
88
0
0
11
0.51
68099--68134
19
1.9
18
88
5
54
41
8
22
27
1.82

Tables:   1

The End!