Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021455.1 Corchorus olitorius cultivar O-4 contig21488, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2040
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39


Found at i:561 original size:24 final size:24

Alignment explanation


    Indices: 529--583  Score: 101
    Period size: 24  Copynumber: 2.3  Consensus size: 24

        519 TATTTAGTTT

                *                   
        529 TATTTTCCTACCACTTTAATTTTC
          1 TATTGTCCTACCACTTTAATTTTC

                                    
        553 TATTGTCCTACCACTTTAATTTTC
          1 TATTGTCCTACCACTTTAATTTTC

                   
        577 TATTGTC
          1 TATTGTC

        584 TTTTATGATT


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  24   30  1.00

ACGTcount: A:0.20, C:0.24, G:0.04, T:0.53


Consensus pattern (24 bp):   
TATTGTCCTACCACTTTAATTTTC
Done.