Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021456.1 Corchorus olitorius cultivar O-4 contig21489, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16106

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1010--1625
41
14.8
41
79
10
501
16
25
21
37
1.93
1058--1329
81
3.3
82
82
4
291
15
25
22
37
1.93
1067--1538
122
3.8
121
79
7
452
16
25
21
37
1.93
1418--1654
47
5.3
47
79
14
279
16
27
18
36
1.93
1399--1713
87
3.6
87
85
3
402
17
25
20
36
1.94
1378--1713
174
1.9
174
86
3
471
16
26
19
36
1.93
4425--4499
35
2.1
35
90
0
114
26
17
16
40
1.90
7225--7266
17
2.4
18
84
7
52
23
40
26
9
1.85
7607--7931
173
1.9
173
83
4
429
34
13
15
36
1.87
10025--10052
14
2.0
14
100
0
56
35
14
7
42
1.73
10799--10869
32
2.2
32
87
5
99
59
0
18
22
1.38
11100--11127
14
2.0
14
100
0
56
28
0
21
50
1.49
11265--11313
25
2.0
25
91
0
80
36
8
14
40
1.75
15413--15541
45
2.8
47
91
3
208
34
6
20
38
1.77
15545--15774
114
2.0
114
99
0
451
33
12
16
36
1.86

Tables:   1

The End!