Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021462.1 Corchorus olitorius cultivar O-4 contig21495, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23275

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3100--3432
178
1.9
178
87
2
490
35
15
13
35
1.87
4768--4934
83
2.0
83
90
0
262
43
13
5
36
1.69
5129--5184
7
8.4
7
78
7
55
82
1
14
1
0.84
11070--11527
139
3.4
135
79
9
488
39
18
11
31
1.85
11024--11550
139
3.9
133
76
11
445
40
18
10
30
1.85
16024--16060
17
2.2
17
95
0
65
45
8
0
45
1.32
16078--16139
31
2.0
31
93
0
106
27
20
8
43
1.80
17358--17447
35
2.6
35
87
7
130
48
24
3
23
1.66
17653--17719
29
2.3
28
85
10
82
38
16
13
31
1.87
17978--18044
30
2.3
30
86
2
91
25
13
26
34
1.93
22177--22218
15
2.7
15
92
3
66
64
14
9
11
1.50

Tables:   1

The End!