Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021464.1 Corchorus olitorius cultivar O-4 contig21497, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66235

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1336--1429
31
3.0
30
83
9
100
42
10
5
41
1.62
1336--1406
32
2.2
32
87
5
99
36
9
5
47
1.60
1857--1898
15
2.7
15
92
3
66
64
14
9
11
1.50
3598--3653
29
1.9
29
86
13
80
51
16
8
23
1.72
8649--8704
22
2.5
23
80
14
71
60
8
14
16
1.57
8666--8710
21
2.2
20
88
11
65
64
6
15
13
1.47
8673--8719
20
2.2
22
85
7
62
65
4
14
14
1.41
13433--13467
15
2.4
15
85
4
54
45
8
20
25
1.79
14263--14337
31
2.4
30
78
6
87
45
0
4
50
1.20
16056--16082
11
2.5
11
100
0
54
48
37
0
14
1.45
17869--17958
30
3.0
30
98
0
171
36
22
26
14
1.92
19523--19861
178
1.9
179
87
6
501
36
15
13
35
1.86
19523--19906
178
2.1
178
84
7
492
37
14
13
34
1.86
20759--20788
2
15.0
2
100
0
60
50
0
0
50
1.00
21605--21638
14
2.4
14
100
0
68
14
8
41
35
1.77
23538--23564
14
1.9
14
100
0
54
29
0
44
25
1.54
32195--32233
19
2.0
20
90
5
62
51
0
12
35
1.40
33203--33313
59
1.9
58
88
5
170
29
11
23
35
1.90
34584--34653
36
1.9
36
91
0
113
21
10
8
60
1.55
34075--35464
693
2.0
691
97
0
2356
38
14
9
37
1.78
36371--36451
39
2.0
40
90
2
128
38
3
7
50
1.48
42495--42541
23
2.0
23
100
0
94
17
40
12
29
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42738--42787
26
1.9
26
91
0
82
78
4
2
16
1.00
42743--42792
13
3.8
13
75
19
50
78
4
2
16
1.00
42745--42789
21
2.1
22
92
8
76
80
4
2
13
0.97
48928--48954
6
4.5
6
100
0
54
51
0
33
14
1.43
49409--49440
2
16.0
2
100
0
64
50
0
0
50
1.00
51128--51222
1
95.0
1
78
0
100
89
10
0
0
0.49
51124--51221
8
12.4
8
87
10
132
88
11
0
0
0.51
51128--51222
23
4.0
24
85
11
133
89
10
0
0
0.49
59411--59442
16
2.0
16
93
0
55
56
9
3
31
1.47

Tables:   1

The End!