Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021465.1 Corchorus olitorius cultivar O-4 contig21498, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 939

Length: 1566
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26


Found at i:533 original size:13 final size:13

Alignment explanation


    Indices: 515--539  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        505 AATATATGTT

                         
        515 GTACCACACTACG
          1 GTACCACACTACG

                        
        528 GTACCACACTAC
          1 GTACCACACTAC

        540 CGTATGTGTT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.32, C:0.40, G:0.12, T:0.16


Consensus pattern (13 bp):   
GTACCACACTACG
Done.