Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021471.1 Corchorus olitorius cultivar O-4 contig21504, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40469

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1935--1980
18
2.5
20
83
16
64
17
15
8
58
1.61
5876--5901
13
2.0
13
100
0
52
84
0
15
0
0.62
9832--9900
30
2.3
30
90
5
104
34
36
17
11
1.86
10361--10440
33
2.4
33
89
0
115
38
5
21
35
1.75
10677--10718
15
2.7
15
92
3
66
64
14
9
11
1.50
17821--17880
21
2.8
21
76
2
66
15
23
45
16
1.85
20984--21026
16
2.8
15
83
13
52
69
4
4
20
1.25
21061--21125
26
2.5
27
82
5
89
27
7
6
58
1.50
21504--21545
15
2.7
15
88
3
57
64
11
9
14
1.50
24144--24197
11
4.8
11
81
18
51
1
16
0
81
0.78
24136--24182
24
2.0
22
88
8
67
4
19
0
76
0.95
24139--24197
10
5.4
10
77
18
55
3
15
0
81
0.82
25910--25944
2
17.5
2
100
0
70
51
0
0
48
1.00
25993--26100
22
5.0
22
74
9
89
34
14
9
41
1.78
26044--26138
42
2.2
44
83
9
115
26
14
10
48
1.76
28021--28051
2
15.5
2
100
0
62
51
0
0
48
1.00
29148--29227
33
2.4
33
91
4
124
11
41
36
11
1.77
29380--29420
13
2.9
14
85
14
57
78
0
21
0
0.76
29378--29450
21
3.6
21
75
17
57
73
0
20
5
1.02
31752--31798
22
2.1
22
96
0
85
48
4
12
34
1.61
32400--32451
27
1.9
26
85
14
70
48
1
9
40
1.47
34097--34146
25
2.0
26
96
4
93
54
4
4
38
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34278--34343
27
2.4
27
80
12
73
43
3
9
43
1.51
36497--36689
95
2.0
95
95
0
350
29
11
20
38
1.87

Tables:   1

The End!