Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021472.1 Corchorus olitorius cultivar O-4 contig21505, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57495

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
849--977
45
2.9
45
97
0
240
33
6
23
37
1.80
8294--8324
14
2.2
14
100
0
62
51
12
6
29
1.65
13107--13143
18
2.1
18
89
0
56
45
5
10
37
1.62
14084--14123
15
2.6
16
92
4
64
15
10
7
67
1.41
18260--18305
16
2.9
16
87
3
58
52
8
30
8
1.62
18393--18438
23
2.0
23
87
8
67
43
13
30
13
1.81
20067--20102
18
2.1
18
89
5
56
44
5
11
38
1.63
20954--20989
19
1.9
18
88
5
54
41
8
22
27
1.82
24156--24213
7
8.1
7
75
9
55
56
1
1
39
1.19
24143--24222
35
2.4
33
76
4
88
51
6
1
41
1.35
26441--26474
16
2.1
17
88
5
52
8
2
2
85
0.80
41550--41697
69
2.1
71
91
6
237
37
22
8
32
1.83
42524--43094
223
2.6
221
90
1
883
34
21
8
35
1.85
44590--44643
19
2.6
21
77
19
60
38
18
3
38
1.69
45437--45990
222
2.5
220
90
2
860
36
22
6
35
1.80
45912--46302
114
3.5
107
85
6
471
33
26
5
34
1.79
46083--46302
115
1.9
114
88
1
334
34
25
5
35
1.78
46688--46756
32
2.2
32
91
0
111
33
24
4
37
1.75
53534--53566
15
2.2
15
94
0
57
45
6
6
42
1.53
53538--53569
15
2.1
15
100
0
64
40
6
9
43
1.62
53883--53954
31
2.3
30
76
19
76
26
4
9
59
1.47
54412--54578
16
10.6
16
92
3
259
39
38
14
6
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56120--56199
35
2.3
35
97
0
151
38
15
17
28
1.90

Tables:   1

The End!